Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. ok626 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
2049762 bp
Thymine Count
2048164 bp
Guanine Count
1337759 bp
Cytosine Count
1326840 bp
Genome Length
6763971 bp
Protein-coding Genes
5456 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| succinate dehydrogenase subunit a | SAMN04487898_107183 | Not Available | Negative | 3066735 - 3068714 | 73312.2 |
| succinate dehydrogenase / fumarate reductase cytochrome b subunit | SAMN04487898_107184 | Not Available | Negative | 3068740 - 3069420 | 25073.5 |
| serine protease, s1-c subfamily, contains c-terminal pdz domain | SAMN04487898_107185 | Not Available | Negative | 3069603 - 3071126 | 52998.9 |
| diaminopimelate epimerase | SAMN04487898_107186 | Not Available | Positive | 3071281 - 3072066 | 29465.7 |
| helicase | SAMN04487898_107187 | Not Available | Negative | 3072080 - 3074374 | 86586.3 |
| protein of unknown function | SAMN04487898_107188 | Not Available | Negative | 3074398 - 3076203 | 67921.0 |
| carboxypeptidase regulatory-like domain-containing protein | SAMN04487898_107189 | Not Available | Positive | 3076367 - 3079159 | 104324.0 |
| glpgli family protein | SAMN04487898_107190 | Not Available | Positive | 3079165 - 3079935 | 28568.8 |
| dna-binding response regulator, ompr family, contains rec and winged-helix (whth) domain | SAMN04487898_107191 | Not Available | Negative | 3079932 - 3080627 | 26569.4 |
| two-component system, ompr family, phosphate regulon sensor histidine kinase phor | SAMN04487898_107192 | Not Available | Negative | 3080627 - 3082495 | 71527.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

