Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. ok626 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
2049762 bp
Thymine Count
2048164 bp
Guanine Count
1337759 bp
Cytosine Count
1326840 bp
Genome Length
6763971 bp
Protein-coding Genes
5456 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| starch-binding associating with outer membrane | SAMN04487898_10753 | Not Available | Negative | 2912726 - 2914696 | 72239.4 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04487898_10754 | Not Available | Negative | 2914709 - 2917975 | 119525.0 |
| hypothetical protein | SAMN04487898_10755 | Not Available | Negative | 2918338 - 2918565 | 8776.71 |
| oxygen-independent coproporphyrinogen-3 oxidase | SAMN04487898_10756 | Not Available | Positive | 2918596 - 2919642 | 39432.6 |
| short-chain dehydrogenase | SAMN04487898_10757 | Not Available | Positive | 2919660 - 2920445 | 28603.8 |
| formylglycine-generating enzyme, required for sulfatase activity, contains sumf1/fge domain | SAMN04487898_10758 | Not Available | Negative | 2920475 - 2921599 | 41509.7 |
| uncharacterized conserved protein, duf1501 family | SAMN04487898_10759 | Not Available | Negative | 2921640 - 2922905 | 45527.4 |
| uncharacterized conserved protein, duf1800 family | SAMN04487898_10760 | Not Available | Negative | 2922923 - 2924911 | 74045.0 |
| uncaracterized surface protein containing fasciclin (fas1) repeats | SAMN04487898_10761 | Not Available | Positive | 2925143 - 2925694 | 19381.0 |
| prolyl oligopeptidase family protein | SAMN04487898_10762 | Not Available | Negative | 2925784 - 2928414 | 100347.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

