Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. ok626 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
2049762 bp
Thymine Count
2048164 bp
Guanine Count
1337759 bp
Cytosine Count
1326840 bp
Genome Length
6763971 bp
Protein-coding Genes
5456 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-linked outer membrane protein, susc/raga family | SAMN04487898_10723 | Not Available | Negative | 2851698 - 2854964 | 120642.0 |
| fecr family protein | SAMN04487898_10724 | Not Available | Negative | 2855272 - 2856402 | 41670.3 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04487898_10725 | Not Available | Negative | 2856495 - 2857067 | 22216.8 |
| hydroxylysine kinase /5-phosphonooxy-l-lysine phospho-lyase apoenzyme | SAMN04487898_10726 | Not Available | Negative | 2857142 - 2859442 | 85792.3 |
| putative isomerase | SAMN04487898_10727 | Not Available | Negative | 2859439 - 2861394 | 74351.9 |
| beta-galactosidase | SAMN04487898_10728 | Not Available | Negative | 2861396 - 2864437 | 115836.0 |
| starch-binding associating with outer membrane | SAMN04487898_10729 | Not Available | Negative | 2864589 - 2866112 | 57293.4 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04487898_10730 | Not Available | Negative | 2866132 - 2869239 | 113374.0 |
| tetratricopeptide repeat-containing protein | SAMN04487898_10731 | Not Available | Negative | 2869419 - 2871026 | 61815.5 |
| predicted atpase | SAMN04487898_10732 | Not Available | Positive | 2871127 - 2871873 | 27904.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

