Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. ok626 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
2049762 bp
Thymine Count
2048164 bp
Guanine Count
1337759 bp
Cytosine Count
1326840 bp
Genome Length
6763971 bp
Protein-coding Genes
5456 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-linked outer membrane protein, susc/raga family | SAMN04487898_106280 | Not Available | Positive | 2779057 - 2782341 | 119619.0 |
| starch-binding associating with outer membrane | SAMN04487898_106281 | Not Available | Positive | 2782358 - 2784379 | 73641.5 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04487898_106282 | Not Available | Positive | 2784683 - 2785246 | 22031.0 |
| signal transduction histidine kinase | SAMN04487898_106283 | Not Available | Negative | 2785289 - 2786530 | 46497.1 |
| Trna-ser | Not Available | Not Available | Positive | 2786734 - 2786823 | Not Available |
| stearoyl-coa desaturase (delta-9 desaturase) | SAMN04487898_106285 | Not Available | Negative | 2786927 - 2788009 | 42009.6 |
| hypothetical protein | SAMN04487898_106286 | Not Available | Positive | 2788265 - 2788786 | 19801.6 |
| atp-dependent rna helicase rhle | SAMN04487898_106287 | Not Available | Negative | 2788795 - 2789925 | 41537.0 |
| chad domain-containing protein | SAMN04487898_106288 | Not Available | Positive | 2789960 - 2790853 | 34601.7 |
| hypothetical protein | SAMN04487898_106289 | Not Available | Positive | 2791011 - 2791634 | 23851.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

