Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. ok626 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
2049762 bp
Thymine Count
2048164 bp
Guanine Count
1337759 bp
Cytosine Count
1326840 bp
Genome Length
6763971 bp
Protein-coding Genes
5456 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| polygalacturonase | SAMN04487898_106270 | Not Available | Positive | 2762914 - 2764458 | 56483.4 |
| sialate o-acetylesterase | SAMN04487898_106271 | Not Available | Positive | 2764458 - 2766464 | 75179.3 |
| hypothetical protein | SAMN04487898_106272 | Not Available | Positive | 2766475 - 2767218 | 26644.7 |
| por secretion system c-terminal sorting domain-containing protein | SAMN04487898_106273 | Not Available | Positive | 2767223 - 2769826 | 94215.1 |
| alpha-1,2-mannosidase, putative | SAMN04487898_106274 | Not Available | Positive | 2769885 - 2772140 | 86060.5 |
| mfs transporter, acs family, hexuronate transporter | SAMN04487898_106275 | Not Available | Positive | 2772130 - 2773356 | 45053.5 |
| l-arabinose isomerase | SAMN04487898_106276 | Not Available | Positive | 2773388 - 2774890 | 55371.0 |
| hypothetical protein | SAMN04487898_106277 | Not Available | Positive | 2774890 - 2777433 | 95622.2 |
| lysophospholipase l1 | SAMN04487898_106278 | Not Available | Positive | 2777450 - 2778157 | 26403.9 |
| gntr family transcriptional regulator | SAMN04487898_106279 | Not Available | Positive | 2778201 - 2778971 | 29212.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

