Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. ok626 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
2049762 bp
Thymine Count
2048164 bp
Guanine Count
1337759 bp
Cytosine Count
1326840 bp
Genome Length
6763971 bp
Protein-coding Genes
5456 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| polygalacturonase | SAMN04487898_106250 | Not Available | Positive | 2736345 - 2737883 | 55281.0 |
| duf218 domain-containing protein | SAMN04487898_106251 | Not Available | Negative | 2737915 - 2738610 | 26382.8 |
| dna end-binding protein ku | SAMN04487898_106252 | Not Available | Positive | 2738729 - 2739493 | 29389.7 |
| bifunctional non-homologous end joining protein ligd | SAMN04487898_106253 | Not Available | Positive | 2739513 - 2742014 | 95023.1 |
| putative membrane protein | SAMN04487898_106254 | Not Available | Negative | 2742006 - 2742593 | 21722.8 |
| hypothetical protein | SAMN04487898_106255 | Not Available | Positive | 2743109 - 2743594 | 19294.7 |
| regulator of nucleoside diphosphate kinase | SAMN04487898_106256 | Not Available | Positive | 2743668 - 2744045 | 14191.4 |
| chloramphenicol acetyltransferase | SAMN04487898_106257 | Not Available | Negative | 2744096 - 2744275 | 6868.41 |
| hypothetical protein | SAMN04487898_106258 | Not Available | Positive | 2744549 - 2744923 | 13874.5 |
| dna-binding transcriptional regulator, mocr family, contains an aminotransferase domain | SAMN04487898_106259 | Not Available | Positive | 2744925 - 2746340 | 53349.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

