Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. ok626 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
2049762 bp
Thymine Count
2048164 bp
Guanine Count
1337759 bp
Cytosine Count
1326840 bp
Genome Length
6763971 bp
Protein-coding Genes
5456 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| yidc/oxa1 family membrane protein insertase | SAMN04487898_106220 | Not Available | Negative | 2700852 - 2702651 | 67920.7 |
| ctp synthase | SAMN04487898_106221 | Not Available | Negative | 2702672 - 2704288 | 59978.2 |
| glpgli family protein | SAMN04487898_106222 | Not Available | Negative | 2704445 - 2705209 | 29403.6 |
| outer membrane receptor proteins, mostly fe transport | SAMN04487898_106223 | Not Available | Negative | 2705219 - 2707993 | 103479.0 |
| hypothetical protein | SAMN04487898_106224 | Not Available | Negative | 2708357 - 2708887 | 20267.3 |
| 3-deoxy-manno-octulosonate cytidylyltransferase (cmp-kdo synthetase) | SAMN04487898_106225 | Not Available | Negative | 2708921 - 2709649 | 27499.7 |
| deoxyadenosine/deoxycytidine kinase | SAMN04487898_106226 | Not Available | Negative | 2709651 - 2710265 | 23814.3 |
| tryptophanyl-trna synthetase | SAMN04487898_106227 | Not Available | Negative | 2710311 - 2711309 | 37813.2 |
| 1-acyl-sn-glycerol-3-phosphate acyltransferase | SAMN04487898_106228 | Not Available | Positive | 2711444 - 2712247 | 30848.2 |
| aspartyl/glutamyl-trna(asn/gln) amidotransferase subunit c | SAMN04487898_106229 | Not Available | Positive | 2712244 - 2712534 | 10909.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

