Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. ok626 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
2049762 bp
Thymine Count
2048164 bp
Guanine Count
1337759 bp
Cytosine Count
1326840 bp
Genome Length
6763971 bp
Protein-coding Genes
5456 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN04487898_106130 | Not Available | Negative | 2574297 - 2574515 | 8109.65 |
| protease i | SAMN04487898_106131 | Not Available | Negative | 2574564 - 2575121 | 19990.7 |
| hypothetical protein | SAMN04487898_106132 | Not Available | Positive | 2575461 - 2575904 | 16877.1 |
| alkylated dna repair dioxygenase alkb | SAMN04487898_106133 | Not Available | Positive | 2575913 - 2576521 | 23660.4 |
| hypothetical protein | SAMN04487898_106134 | Not Available | Negative | 2576977 - 2577132 | 5731.77 |
| uncharacterized protein, duf1810 family | SAMN04487898_106135 | Not Available | Negative | 2577287 - 2577721 | 16533.2 |
| gliding motility-associated c-terminal domain-containing protein | SAMN04487898_106136 | Not Available | Negative | 2577847 - 2583597 | 197344.0 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04487898_106137 | Not Available | Positive | 2583803 - 2584405 | 23716.5 |
| fecr family protein | SAMN04487898_106138 | Not Available | Positive | 2584464 - 2585390 | 35082.2 |
| outer membrane receptor proteins, mostly fe transport | SAMN04487898_106139 | Not Available | Positive | 2585531 - 2588962 | 129275.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

