Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. ok626 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
2049762 bp
Thymine Count
2048164 bp
Guanine Count
1337759 bp
Cytosine Count
1326840 bp
Genome Length
6763971 bp
Protein-coding Genes
5456 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| exodeoxyribonuclease-5 | SAMN04487898_105216 | Not Available | Positive | 2316694 - 2318136 | 54136.2 |
| four helix bundle sensory module for signal transduction | SAMN04487898_105217 | Not Available | Positive | 2318154 - 2318840 | 25684.5 |
| signal transduction histidine kinase | SAMN04487898_105218 | Not Available | Negative | 2318837 - 2320108 | 47483.2 |
| outer membrane protein tolc | SAMN04487898_105219 | Not Available | Positive | 2320247 - 2321599 | 50203.6 |
| rnd family efflux transporter, mfp subunit | SAMN04487898_105220 | Not Available | Positive | 2321620 - 2322720 | 39990.4 |
| multidrug efflux pump subunit acrb | SAMN04487898_105221 | Not Available | Positive | 2322742 - 2326125 | 124880.0 |
| histidine decarboxylase | SAMN04487898_105222 | Not Available | Negative | 2326285 - 2327424 | 42680.3 |
| protein of unknown function | SAMN04487898_105223 | Not Available | Positive | 2327803 - 2328582 | 29336.6 |
| moxr-like atpase | SAMN04487898_105224 | Not Available | Positive | 2328883 - 2329911 | 38456.9 |
| protein of unknown function duf58 | SAMN04487898_105225 | Not Available | Positive | 2329916 - 2330791 | 33507.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

