Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. ok626 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
2049762 bp
Thymine Count
2048164 bp
Guanine Count
1337759 bp
Cytosine Count
1326840 bp
Genome Length
6763971 bp
Protein-coding Genes
5456 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp-dependent clp protease atp-binding subunit clpb | SAMN04487898_105206 | Not Available | Negative | 2307071 - 2309665 | 97212.4 |
| predicted arabinose efflux permease, mfs family | SAMN04487898_105207 | Not Available | Positive | 2309819 - 2311075 | 46536.5 |
| hypothetical protein | SAMN04487898_105208 | Not Available | Positive | 2311129 - 2311728 | 22562.2 |
| hypothetical protein | SAMN04487898_105209 | Not Available | Negative | 2311780 - 2312178 | 14708.7 |
| orotate phosphoribosyltransferase | SAMN04487898_105210 | Not Available | Negative | 2312184 - 2312843 | 24207.0 |
| rna polymerase primary sigma factor | SAMN04487898_105211 | Not Available | Positive | 2313108 - 2314061 | 36444.0 |
| nudix domain-containing protein | SAMN04487898_105212 | Not Available | Positive | 2314175 - 2314795 | 23150.4 |
| phosphopantetheine adenylyltransferase | SAMN04487898_105213 | Not Available | Negative | 2314818 - 2315279 | 17248.0 |
| 16s rrna (guanine(966)-n(2))-methyltransferase rsmd | SAMN04487898_105214 | Not Available | Negative | 2315284 - 2315820 | 20298.6 |
| protein of unknown function | SAMN04487898_105215 | Not Available | Negative | 2315811 - 2316641 | 31409.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

