Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. ok626 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
2049762 bp
Thymine Count
2048164 bp
Guanine Count
1337759 bp
Cytosine Count
1326840 bp
Genome Length
6763971 bp
Protein-coding Genes
5456 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-linked outer membrane protein, susc/raga family | SAMN04487898_10511 | Not Available | Negative | 2079547 - 2082996 | 126549.0 |
| fecr family protein | SAMN04487898_10512 | Not Available | Negative | 2083093 - 2084229 | 42937.7 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04487898_10513 | Not Available | Negative | 2084230 - 2084814 | 22786.8 |
| pectate lyase superfamily protein | SAMN04487898_10514 | Not Available | Negative | 2084954 - 2086639 | 60865.6 |
| glycosyl hydrolase family 88 | SAMN04487898_10515 | Not Available | Positive | 2086838 - 2088055 | 46200.5 |
| bnr repeat-containing family member | SAMN04487898_10516 | Not Available | Positive | 2088078 - 2089517 | 54384.5 |
| putative mrna 3-end processing factor | SAMN04487898_10517 | Not Available | Positive | 2089957 - 2090967 | 37398.4 |
| dna ligase-1 | SAMN04487898_10518 | Not Available | Positive | 2090968 - 2092572 | 61591.9 |
| atp-dependent helicase lhr and lhr-like helicase | SAMN04487898_10519 | Not Available | Positive | 2092608 - 2095166 | 97246.3 |
| putative phosphoesterase | SAMN04487898_10520 | Not Available | Positive | 2095156 - 2095830 | 25732.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

