Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. ok626 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
2049762 bp
Thymine Count
2048164 bp
Guanine Count
1337759 bp
Cytosine Count
1326840 bp
Genome Length
6763971 bp
Protein-coding Genes
5456 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| uncharacterized conserved protein ybcv, duf1398 family | SAMN04487898_104394 | Not Available | Negative | 2062620 - 2063300 | 25820.6 |
| rna-directed dna polymerase | SAMN04487898_1051 | Not Available | Positive | 2063766 - 2065091 | 51229.6 |
| protein of unknown function | SAMN04487898_1052 | Not Available | Positive | 2065088 - 2066146 | 39062.8 |
| heparinase ii/iii-like protein | SAMN04487898_1054 | Not Available | Positive | 2066158 - 2068077 | 71508.6 |
| por secretion system c-terminal sorting domain-containing protein | SAMN04487898_1055 | Not Available | Positive | 2068110 - 2071988 | 137413.0 |
| alpha-l-fucosidase | SAMN04487898_1056 | Not Available | Positive | 2072003 - 2073415 | 54052.2 |
| lysophospholipase l1 | SAMN04487898_1057 | Not Available | Positive | 2073426 - 2074805 | 52435.2 |
| polysaccharide pyruvyl transferase | SAMN04487898_1058 | Not Available | Positive | 2074822 - 2076093 | 47672.8 |
| hypothetical protein | SAMN04487898_1059 | Not Available | Negative | 2076098 - 2078056 | 74157.0 |
| starch-binding associating with outer membrane | SAMN04487898_10510 | Not Available | Negative | 2078059 - 2079528 | 54610.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

