Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. ok626 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
2049762 bp
Thymine Count
2048164 bp
Guanine Count
1337759 bp
Cytosine Count
1326840 bp
Genome Length
6763971 bp
Protein-coding Genes
5456 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| n-acetylmuramic acid 6-phosphate etherase | SAMN04487898_104384 | Not Available | Positive | 2045196 - 2045987 | 28310.4 |
| glucose/galactose transporter | SAMN04487898_104385 | Not Available | Positive | 2045991 - 2047283 | 46925.8 |
| polygalacturonase | SAMN04487898_104386 | Not Available | Positive | 2047276 - 2048850 | 56063.1 |
| glycosyl hydrolase family 20, catalytic domain | SAMN04487898_104387 | Not Available | Positive | 2048874 - 2051366 | 93395.9 |
| pectic acid lyase | SAMN04487898_104388 | Not Available | Positive | 2051335 - 2052606 | 48199.2 |
| tonb-dependent receptor | SAMN04487898_104389 | Not Available | Positive | 2052657 - 2055488 | 103522.0 |
| glucosamine-6-phosphate deaminase | SAMN04487898_104390 | Not Available | Positive | 2055495 - 2056259 | 28634.5 |
| rhamnogalacturonyl hydrolase yesr | SAMN04487898_104391 | Not Available | Positive | 2056271 - 2058004 | 65675.8 |
| hypothetical protein | SAMN04487898_104392 | Not Available | Positive | 2058049 - 2060775 | 101627.0 |
| hypothetical protein | SAMN04487898_104393 | Not Available | Positive | 2060787 - 2062670 | 70152.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

