Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. ok626 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
2049762 bp
Thymine Count
2048164 bp
Guanine Count
1337759 bp
Cytosine Count
1326840 bp
Genome Length
6763971 bp
Protein-coding Genes
5456 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| helix-turn-helix | SAMN04487898_104314 | Not Available | Negative | 1968139 - 1968345 | 7490.21 |
| hypothetical protein | SAMN04487898_104315 | Not Available | Negative | 1968775 - 1968969 | 7618.16 |
| uncharacterized conserved protein yece, duf72 family | SAMN04487898_104316 | Not Available | Positive | 1969129 - 1970073 | 35983.0 |
| alkyl hydroperoxide reductase subunit ahpc (peroxiredoxin) | SAMN04487898_104317 | Not Available | Positive | 1970147 - 1970782 | 23603.0 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04487898_104318 | Not Available | Positive | 1970933 - 1971499 | 21733.3 |
| fecr family protein | SAMN04487898_104319 | Not Available | Positive | 1971585 - 1972691 | 40576.2 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04487898_104320 | Not Available | Positive | 1972908 - 1976294 | 123983.0 |
| starch-binding associating with outer membrane | SAMN04487898_104321 | Not Available | Positive | 1976325 - 1977776 | 53664.7 |
| peroxiredoxin | SAMN04487898_104322 | Not Available | Positive | 1977779 - 1978954 | 43747.5 |
| protein of unknown function | SAMN04487898_104323 | Not Available | Negative | 1979026 - 1982022 | 112791.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

