Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. ok626 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
2049762 bp
Thymine Count
2048164 bp
Guanine Count
1337759 bp
Cytosine Count
1326840 bp
Genome Length
6763971 bp
Protein-coding Genes
5456 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-pseudo | Not Available | Not Available | Positive | 169628 - 169700 | Not Available |
| formamidopyrimidine-dna glycosylase | SAMN04487898_101121 | Not Available | Positive | 169964 - 170749 | 30303.6 |
| dna polymerase-3 subunit epsilon | SAMN04487898_101122 | Not Available | Positive | 170785 - 171258 | 18272.7 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04487898_101123 | Not Available | Positive | 171318 - 171911 | 22738.7 |
| fecr family protein | SAMN04487898_101124 | Not Available | Positive | 172031 - 173161 | 41974.2 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04487898_101125 | Not Available | Positive | 173455 - 176733 | 119977.0 |
| susd family protein | SAMN04487898_101126 | Not Available | Positive | 176745 - 178184 | 52967.1 |
| hypothetical protein | SAMN04487898_101127 | Not Available | Positive | 178203 - 178970 | 28575.3 |
| abc-2 type transport system atp-binding protein | SAMN04487898_101128 | Not Available | Positive | 179114 - 180037 | 34310.9 |
| abc-2 type transport system permease protein | SAMN04487898_101129 | Not Available | Positive | 180000 - 182357 | 87841.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

