Pedobacter sp. ok626

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter sp. OK626 is a bacterial strain notable for its flagella presence, which suggests motility capabilities. This characteristic is significant as it may influence the bacterium's ability to navigate various environments, potentially aiding in nutrient acquisition or colonization of specific niches. The strain possesses a single replicon, indicating a streamlined genomic organization that could be advantageous for replication efficiency and resource allocation. This trait often reflects adaptation to specific ecological niches, where maintaining a compact genome may facilitate survival under selective pressures. The genomic data for Pedobacter sp. OK626 is documented under the accession number FNEX00000000.1, providing a reference for research and further study. This genetic information can be crucial for understanding the strain's metabolic pathways, ecological interactions, and potential applications in biotechnology or environmental microbiology. In summary, the presence of flagella and a singular replicon in Pedobacter sp. OK626 suggests adaptations that may enhance its survivability in dynamic environments. These traits could enable the bacterium to thrive in varied habitats, contributing to its ecological roles, such as in nutrient cycling or biodegradation processes.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter sp. ok626
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter sp. ok626 genome assembly, contig: Ga0066764_135, whole

Gene Summary

Adenine Count

2049762 bp

Thymine Count

2048164 bp

Guanine Count

1337759 bp

Cytosine Count

1326840 bp

Genome Length

6763971 bp

Protein-coding Genes

5456 genes

Non-Coding Genes

76 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
superfamily ii dna or rna helicaseSAMN04487898_104244Not AvailablePositive1879737 - 1882637110576.0
outer membrane proteinSAMN04487898_104245Not AvailablePositive1883056 - 188435147959.0
hlyd family secretion proteinSAMN04487898_104246Not AvailablePositive1884388 - 188556642060.5
putative abc transport system atp-binding proteinSAMN04487898_104247Not AvailablePositive1885566 - 188631827744.4
putative abc transport system permease proteinSAMN04487898_104248Not AvailablePositive1886315 - 188753543732.6
two component transcriptional regulator, lyttr familySAMN04487898_104249Not AvailableNegative1887550 - 188827827602.6
histidine kinaseSAMN04487898_104250Not AvailableNegative1888275 - 188934540594.6
sugar phosphate isomerase/epimeraseSAMN04487898_104251Not AvailableNegative1889820 - 189070433096.7
h+/cl-antiporter clcaSAMN04487898_104252Not AvailableNegative1890801 - 189245358538.0
camp-binding domain of crp or a regulatory subunit of camp-dependent protein kinasesSAMN04487898_104253Not AvailablePositive1892745 - 189338324055.2

Displaying genes 1571 – 1580 of 5532 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.