Pedobacter sp. ok626

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter sp. OK626 is a bacterial strain notable for its flagella presence, which suggests motility capabilities. This characteristic is significant as it may influence the bacterium's ability to navigate various environments, potentially aiding in nutrient acquisition or colonization of specific niches. The strain possesses a single replicon, indicating a streamlined genomic organization that could be advantageous for replication efficiency and resource allocation. This trait often reflects adaptation to specific ecological niches, where maintaining a compact genome may facilitate survival under selective pressures. The genomic data for Pedobacter sp. OK626 is documented under the accession number FNEX00000000.1, providing a reference for research and further study. This genetic information can be crucial for understanding the strain's metabolic pathways, ecological interactions, and potential applications in biotechnology or environmental microbiology. In summary, the presence of flagella and a singular replicon in Pedobacter sp. OK626 suggests adaptations that may enhance its survivability in dynamic environments. These traits could enable the bacterium to thrive in varied habitats, contributing to its ecological roles, such as in nutrient cycling or biodegradation processes.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter sp. ok626
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter sp. ok626 genome assembly, contig: Ga0066764_135, whole

Gene Summary

Adenine Count

2049762 bp

Thymine Count

2048164 bp

Guanine Count

1337759 bp

Cytosine Count

1326840 bp

Genome Length

6763971 bp

Protein-coding Genes

5456 genes

Non-Coding Genes

76 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
peptidase s46SAMN04487898_104224Not AvailablePositive1858008 - 186017080948.1
lactoylglutathione lyaseSAMN04487898_104225Not AvailablePositive1860353 - 186082017459.8
lysophospholipase l1SAMN04487898_104226Not AvailablePositive1860911 - 186185235077.0
phosphoribosylformylglycinamidine cyclo-ligaseSAMN04487898_104227Not AvailableNegative1861877 - 186309444213.6
glutamine synthetaseSAMN04487898_104228Not AvailableNegative1863146 - 186533281469.6
hypothetical proteinSAMN04487898_104229Not AvailableNegative1865533 - 186644735498.5
predicted membrane proteinSAMN04487898_104230Not AvailableNegative1866428 - 186889992443.4
putative auto-transporter adhesin, head gin domainSAMN04487898_104231Not AvailableNegative1868956 - 186969325427.6
hypothetical proteinSAMN04487898_104232Not AvailableNegative1869811 - 18700539189.88
phosphoribosylformylglycinamidine synthaseSAMN04487898_104233Not AvailableNegative1870229 - 1873897133986.0

Displaying genes 1551 – 1560 of 5532 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.