Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. ok626 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
2049762 bp
Thymine Count
2048164 bp
Guanine Count
1337759 bp
Cytosine Count
1326840 bp
Genome Length
6763971 bp
Protein-coding Genes
5456 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna recognition motif. (a.k.a. rrm, rbd, or rnp domain) | SAMN04487898_104204 | Not Available | Positive | 1828862 - 1829170 | 11394.9 |
| rok family protein (putative glucokinase) | SAMN04487898_104205 | Not Available | Negative | 1829321 - 1830547 | 44728.2 |
| s-formylglutathione hydrolase frmb | SAMN04487898_104206 | Not Available | Positive | 1830977 - 1831783 | 30277.6 |
| hypothetical protein | SAMN04487898_104207 | Not Available | Positive | 1831783 - 1833012 | 44983.6 |
| sugar kinase of the nbd/hsp70 family, may contain an n-terminal hth domain | SAMN04487898_104208 | Not Available | Negative | 1833013 - 1834233 | 44222.8 |
| hexosaminidase | SAMN04487898_104209 | Not Available | Positive | 1834377 - 1836266 | 70864.8 |
| predicted protein | SAMN04487898_104210 | Not Available | Positive | 1836357 - 1837424 | 37801.6 |
| fad dependent oxidoreductase | SAMN04487898_104211 | Not Available | Positive | 1837466 - 1839349 | 69167.5 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04487898_104212 | Not Available | Positive | 1839383 - 1842571 | 116871.0 |
| starch-binding associating with outer membrane | SAMN04487898_104213 | Not Available | Positive | 1842589 - 1844397 | 66286.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

