Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. ok626 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
2049762 bp
Thymine Count
2048164 bp
Guanine Count
1337759 bp
Cytosine Count
1326840 bp
Genome Length
6763971 bp
Protein-coding Genes
5456 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| msep-cterm protein | SAMN04487898_104184 | Not Available | Negative | 1806169 - 1808979 | 107349.0 |
| exosortase k | SAMN04487898_104185 | Not Available | Negative | 1808963 - 1809496 | 20459.6 |
| protein of unknown function | SAMN04487898_104186 | Not Available | Negative | 1809502 - 1811070 | 60404.9 |
| winged helix dna-binding domain-containing protein | SAMN04487898_104187 | Not Available | Negative | 1811212 - 1811508 | 11128.7 |
| hypothetical protein | SAMN04487898_104188 | Not Available | Negative | 1811508 - 1812137 | 23440.2 |
| lipoprotein-releasing system atp-binding protein | SAMN04487898_104189 | Not Available | Positive | 1812257 - 1812907 | 23579.7 |
| hypothetical protein | SAMN04487898_104190 | Not Available | Positive | 1812904 - 1813227 | 11806.0 |
| haloacid dehalogenase-like hydrolase | SAMN04487898_104191 | Not Available | Positive | 1813227 - 1813835 | 23806.9 |
| c-terminal processing protease ctpa/prc, contains a pdz domain | SAMN04487898_104192 | Not Available | Positive | 1813878 - 1815560 | 60642.3 |
| hypothetical protein | SAMN04487898_104193 | Not Available | Positive | 1815601 - 1815948 | 13140.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

