Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. ok626 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
2049762 bp
Thymine Count
2048164 bp
Guanine Count
1337759 bp
Cytosine Count
1326840 bp
Genome Length
6763971 bp
Protein-coding Genes
5456 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transglutaminase-like enzyme, putative cysteine protease | SAMN04487898_10434 | Not Available | Positive | 1654389 - 1655231 | 31263.4 |
| dna-binding transcriptional regulator gbsr, marr family | SAMN04487898_10435 | Not Available | Positive | 1655328 - 1655834 | 19350.3 |
| protein of unknown function, duf393 | SAMN04487898_10436 | Not Available | Positive | 1655842 - 1656654 | 31017.8 |
| hypothetical protein | SAMN04487898_10437 | Not Available | Positive | 1656665 - 1657588 | 34401.6 |
| hypothetical protein | SAMN04487898_10438 | Not Available | Positive | 1657604 - 1658035 | 16435.9 |
| membrane bound o-acyl transferase family protein | SAMN04487898_10439 | Not Available | Positive | 1658085 - 1658864 | 29499.2 |
| putative abc transport system permease protein | SAMN04487898_10440 | Not Available | Negative | 1658839 - 1660062 | 43706.8 |
| putative abc transport system atp-binding protein | SAMN04487898_10441 | Not Available | Negative | 1660072 - 1660818 | 27458.0 |
| hlyd family secretion protein | SAMN04487898_10442 | Not Available | Negative | 1660818 - 1662017 | 43490.4 |
| outer membrane protein | SAMN04487898_10443 | Not Available | Negative | 1662022 - 1663338 | 48416.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

