Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. ok626 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
2049762 bp
Thymine Count
2048164 bp
Guanine Count
1337759 bp
Cytosine Count
1326840 bp
Genome Length
6763971 bp
Protein-coding Genes
5456 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-linked outer membrane protein, susc/raga family | SAMN04487898_10424 | Not Available | Positive | 1640695 - 1644183 | 127937.0 |
| starch-binding associating with outer membrane | SAMN04487898_10425 | Not Available | Positive | 1644218 - 1645750 | 56305.2 |
| alkaline phosphatase | SAMN04487898_10426 | Not Available | Positive | 1645757 - 1647607 | 68002.2 |
| protein of unknown function | SAMN04487898_10427 | Not Available | Negative | 1647738 - 1649135 | 52836.7 |
| acetyltransferase (gnat) family protein | SAMN04487898_10428 | Not Available | Positive | 1649289 - 1649798 | 19427.5 |
| hypothetical protein | SAMN04487898_10429 | Not Available | Negative | 1649818 - 1650087 | 10464.3 |
| haloacid dehalogenase superfamily, subfamily ia, variant 3 with third motif having dd or ed | SAMN04487898_10430 | Not Available | Negative | 1650100 - 1650768 | 25028.9 |
| transglutaminase-like enzyme, putative cysteine protease | SAMN04487898_10431 | Not Available | Negative | 1650830 - 1651810 | 37913.3 |
| uncharacterized conserved protein, alpha-e superfamily | SAMN04487898_10432 | Not Available | Negative | 1651816 - 1652748 | 35973.3 |
| uncharacterized conserved protein, circularly permuted atpgrasp superfamily | SAMN04487898_10433 | Not Available | Negative | 1652779 - 1654230 | 54423.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

