Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. ok626 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
2049762 bp
Thymine Count
2048164 bp
Guanine Count
1337759 bp
Cytosine Count
1326840 bp
Genome Length
6763971 bp
Protein-coding Genes
5456 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin subunit | SAMN04487898_103401 | Not Available | Negative | 1583207 - 1583548 | 12948.6 |
| organic radical activating enzyme | SAMN04487898_103402 | Not Available | Positive | 1583626 - 1584249 | 23523.2 |
| wd40-like beta propeller repeat | SAMN04487898_103403 | Not Available | Positive | 1584309 - 1586201 | 70767.5 |
| 2-dehydro-3-deoxyphosphooctonate aldolase (kdo 8-p synthase) | SAMN04487898_103404 | Not Available | Negative | 1586210 - 1587025 | 29286.7 |
| atp-dependent dna helicase recq | SAMN04487898_103405 | Not Available | Negative | 1587041 - 1589230 | 82308.9 |
| arabinose-5-phosphate isomerase | SAMN04487898_103406 | Not Available | Positive | 1589320 - 1590285 | 34581.2 |
| mannose-1-phosphate guanylyltransferase | SAMN04487898_103407 | Not Available | Positive | 1590328 - 1591392 | 39676.4 |
| hypothetical chaperone protein | SAMN04487898_103408 | Not Available | Positive | 1591445 - 1592755 | 49478.0 |
| 23s rrna (guanosine2251-2'-o)-methyltransferase | SAMN04487898_103409 | Not Available | Negative | 1592780 - 1593544 | 27786.1 |
| replicative dna helicase | SAMN04487898_103410 | Not Available | Positive | 1593709 - 1595280 | 57857.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

