Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. ok626 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
2049762 bp
Thymine Count
2048164 bp
Guanine Count
1337759 bp
Cytosine Count
1326840 bp
Genome Length
6763971 bp
Protein-coding Genes
5456 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| crp/fnr family transcriptional regulator, anaerobic regulatory protein | SAMN04487898_10191 | Not Available | Negative | 139496 - 140140 | 25030.4 |
| osmotically-inducible protein osmy, contains bon domain | SAMN04487898_10192 | Not Available | Positive | 140423 - 141097 | 24856.5 |
| nitroreductase | SAMN04487898_10193 | Not Available | Positive | 141122 - 141712 | 22186.5 |
| hsp20 family protein | SAMN04487898_10194 | Not Available | Positive | 141743 - 142171 | 16267.9 |
| hypothetical protein | SAMN04487898_10195 | Not Available | Positive | 142271 - 143368 | 41470.4 |
| phospholipid/cholesterol/gamma-hch transport system permease protein | SAMN04487898_10196 | Not Available | Positive | 143400 - 144179 | 27940.8 |
| phospholipid/cholesterol/gamma-hch transport system atp-binding protein | SAMN04487898_10197 | Not Available | Positive | 144192 - 144962 | 28929.1 |
| phospholipid/cholesterol/gamma-hch transport system substrate-binding protein | SAMN04487898_10198 | Not Available | Positive | 144962 - 145945 | 35749.6 |
| d-lactate dehydrogenase | SAMN04487898_10199 | Not Available | Negative | 145975 - 146931 | 35328.8 |
| l,d-transpeptidase catalytic domain | SAMN04487898_101100 | Not Available | Positive | 147156 - 148478 | 50771.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

