Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. ok626 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
2049762 bp
Thymine Count
2048164 bp
Guanine Count
1337759 bp
Cytosine Count
1326840 bp
Genome Length
6763971 bp
Protein-coding Genes
5456 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| o-antigen ligase | SAMN04487898_103381 | Not Available | Negative | 1565504 - 1566793 | 49465.2 |
| hypothetical protein | SAMN04487898_103382 | Not Available | Negative | 1566813 - 1567889 | 42390.4 |
| sugar transferase involved in lps biosynthesis (colanic, teichoic acid) | SAMN04487898_103383 | Not Available | Negative | 1567916 - 1568461 | 21117.2 |
| glycosyltransferase involved in cell wall bisynthesis | SAMN04487898_103384 | Not Available | Negative | 1568570 - 1569427 | 33570.7 |
| membrane protein involved in the export of o-antigen and teichoic acid | SAMN04487898_103385 | Not Available | Negative | 1569536 - 1570978 | 54832.0 |
| udp-n-acetyl-d-galactosamine dehydrogenase | SAMN04487898_103386 | Not Available | Negative | 1571017 - 1572309 | 47628.4 |
| hypothetical protein | SAMN04487898_103387 | Not Available | Positive | 1572941 - 1573357 | 15862.7 |
| hypothetical protein | SAMN04487898_103388 | Not Available | Negative | 1573390 - 1574037 | 24149.1 |
| l-glyceraldehyde 3-phosphate reductase | SAMN04487898_103389 | Not Available | Negative | 1574057 - 1575046 | 36993.1 |
| hypothetical protein | SAMN04487898_103390 | Not Available | Negative | 1575110 - 1575289 | 6559.87 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

