Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. ok626 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
2049762 bp
Thymine Count
2048164 bp
Guanine Count
1337759 bp
Cytosine Count
1326840 bp
Genome Length
6763971 bp
Protein-coding Genes
5456 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| outer membrane efflux protein | SAMN04487898_103291 | Not Available | Negative | 1469044 - 1469724 | 26304.8 |
| sugar transferase involved in lps biosynthesis (colanic, teichoic acid) | SAMN04487898_103292 | Not Available | Negative | 1469775 - 1470860 | 41604.9 |
| response regulator receiver domain-containing protein | SAMN04487898_103293 | Not Available | Negative | 1470857 - 1471240 | 14366.5 |
| hypothetical protein | SAMN04487898_103294 | Not Available | Negative | 1471550 - 1471918 | 13747.5 |
| pas domain s-box-containing protein | SAMN04487898_103295 | Not Available | Positive | 1472370 - 1475909 | 133819.0 |
| ymgg-like gly-zipper | SAMN04487898_103296 | Not Available | Negative | 1475947 - 1476387 | 15027.0 |
| cold shock protein (beta-ribbon, cspa family) | SAMN04487898_103297 | Not Available | Positive | 1476611 - 1476817 | 7369.54 |
| nucleoside-diphosphate-sugar epimerase | SAMN04487898_103298 | Not Available | Positive | 1476888 - 1477730 | 31104.4 |
| metallo-beta-lactamase family protein | SAMN04487898_103299 | Not Available | Positive | 1477733 - 1479118 | 52183.8 |
| ompa-ompf porin, oop family | SAMN04487898_103300 | Not Available | Positive | 1479341 - 1480669 | 47690.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

