Pedobacter sp. ok626

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter sp. OK626 is a bacterial strain notable for its flagella presence, which suggests motility capabilities. This characteristic is significant as it may influence the bacterium's ability to navigate various environments, potentially aiding in nutrient acquisition or colonization of specific niches. The strain possesses a single replicon, indicating a streamlined genomic organization that could be advantageous for replication efficiency and resource allocation. This trait often reflects adaptation to specific ecological niches, where maintaining a compact genome may facilitate survival under selective pressures. The genomic data for Pedobacter sp. OK626 is documented under the accession number FNEX00000000.1, providing a reference for research and further study. This genetic information can be crucial for understanding the strain's metabolic pathways, ecological interactions, and potential applications in biotechnology or environmental microbiology. In summary, the presence of flagella and a singular replicon in Pedobacter sp. OK626 suggests adaptations that may enhance its survivability in dynamic environments. These traits could enable the bacterium to thrive in varied habitats, contributing to its ecological roles, such as in nutrient cycling or biodegradation processes.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter sp. ok626
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter sp. ok626 genome assembly, contig: Ga0066764_135, whole

Gene Summary

Adenine Count

2049762 bp

Thymine Count

2048164 bp

Guanine Count

1337759 bp

Cytosine Count

1326840 bp

Genome Length

6763971 bp

Protein-coding Genes

5456 genes

Non-Coding Genes

76 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
outer membrane efflux proteinSAMN04487898_103291Not AvailableNegative1469044 - 146972426304.8
sugar transferase involved in lps biosynthesis (colanic, teichoic acid)SAMN04487898_103292Not AvailableNegative1469775 - 147086041604.9
response regulator receiver domain-containing proteinSAMN04487898_103293Not AvailableNegative1470857 - 147124014366.5
hypothetical proteinSAMN04487898_103294Not AvailableNegative1471550 - 147191813747.5
pas domain s-box-containing proteinSAMN04487898_103295Not AvailablePositive1472370 - 1475909133819.0
ymgg-like gly-zipperSAMN04487898_103296Not AvailableNegative1475947 - 147638715027.0
cold shock protein (beta-ribbon, cspa family)SAMN04487898_103297Not AvailablePositive1476611 - 14768177369.54
nucleoside-diphosphate-sugar epimeraseSAMN04487898_103298Not AvailablePositive1476888 - 147773031104.4
metallo-beta-lactamase family proteinSAMN04487898_103299Not AvailablePositive1477733 - 147911852183.8
ompa-ompf porin, oop familySAMN04487898_103300Not AvailablePositive1479341 - 148066947690.1

Displaying genes 1191 – 1200 of 5532 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.