Pedobacter sp. Hv1

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter sp. Hv1 is a bacterial strain characterized by the presence of flagella, which suggests it has the capability for motility. This trait can be significant for its ecological interactions, enabling the bacterium to navigate its environment effectively. Pedobacter species, belonging to the family Sphingobacteriaceae, are known to be found in various habitats, including soil and aquatic environments, where they may play roles in decomposition and nutrient cycling. The genome of Pedobacter sp. Hv1 is represented by a single replicon, indicating a streamlined genetic structure that may be adapted for efficient replication and survival in its niche. The accession number for its genomic data is LLWP00000000.1, which serves as a reference for further studies and analyses related to this strain. Understanding the traits of Pedobacter sp. Hv1 allows researchers to appreciate its potential roles in ecosystems. The presence of flagella may enhance its ability to colonize different substrates, contributing to its ecological versatility. As such, the study of this bacterium can provide insights into microbial dynamics in various environments, including soil health and nutrient cycling processes.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter sp. Hv1
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter sp. Hv1


Gene Summary

Adenine Count

1537948 bp

Thymine Count

1537333 bp

Guanine Count

891789 bp

Cytosine Count

928197 bp

Genome Length

4895269 bp

Protein-coding Genes

4243 genes

Non-Coding Genes

58 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Terminase large subunitAQF98_00500Not AvailablePositive90895 - 9280872808.7
hypothetical proteinAQF98_00505Not AvailablePositive92838 - 9317613146.7
hypothetical proteinAQF98_00510Not AvailablePositive93173 - 933767865.54
Portal proteinAQF98_00515Not AvailablePositive93376 - 9484854742.7
Putative major head proteinAQF98_00520B0ZSF3Positive95403 - 9735570538.5
Putative recombinaseAQF98_00525Not AvailablePositive97393 - 9776412563.0
hypothetical proteinAQF98_00530Not AvailablePositive97771 - 9810312147.3
hypothetical proteinAQF98_00535Not AvailablePositive98103 - 9857918182.7
hypothetical proteinAQF98_00540Not AvailablePositive98610 - 988047194.65
Major tail sheath proteinAQF98_00545Q6QIB0Positive98804 - 10021649523.8

Displaying genes 1 – 10 of 4301 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

170 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000047sophoroseC12H22O11Chemical structure of sophoroseNot available
Average342.297Da
Monoisotopic342.116211528Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000315acetylpyruvateC5H6O4Chemical structure of acetylpyruvateNot available
Average130.099Da
Monoisotopic130.0266087Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da

Displaying 1–10 of 170 metabolites

Health Effects

No health effects information available for this bacterium.