Pelomonas sp. Root662

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Sphaerotilaceae

Genus

Roseateles

Description

Pelomonas sp. Root662 is a Gram-negative bacterium characterized by its rod shape. This microorganism possesses a single replicon, which is indicative of its genetic makeup and replication strategy. The genome of Pelomonas sp. Root662 is cataloged under the accession number LMHE00000000.1, which provides a reference for researchers studying its genomic attributes. As a member of the genus Pelomonas, this bacterium is likely to inhabit various environments, potentially playing a role in nutrient cycling or interactions with plant roots. The Gram-negative nature of Pelomonas sp. Root662 suggests that it may possess an outer membrane that can impact its interaction with surrounding ecological factors and organisms. This characteristic can influence its pathogenicity, symbiotic relationships, or competitive abilities within its niche. In summary, the defining traits of Pelomonas sp. Root662 highlight its basic biological structure and genetic composition. The presence of a single replicon may suggest a streamlined genetic operation, potentially advantageous for survival in fluctuating environments. Understanding these traits could provide insights into the ecological functions of Pelomonas sp. Root662, particularly in relation to its interactions within microbial communities and its potential role in soil health and plant growth.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilySphaerotilaceae
GenusRoseateles
SpeciesPelomonas sp. Root662
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pelomonas sp. Root662


Gene Summary

Adenine Count

935271 bp

Thymine Count

936765 bp

Guanine Count

1972892 bp

Cytosine Count

1967290 bp

Genome Length

5812563 bp

Protein-coding Genes

5135 genes

Non-Coding Genes

60 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
5s ribosomal rnaNot AvailableNot AvailablePositive125 - 237Not Available
23s ribosomal rnaNot AvailableNot AvailablePositive414 - 3308Not Available
hypothetical proteinASD88_00005Not AvailablePositive957 - 128311805.5
Trna-argNot AvailableNot AvailablePositive1843 - 1918Not Available
cytochrome cASD88_00015Not AvailablePositive2054 - 259318244.6
hypothetical proteinASD88_00020Not AvailableNegative2652 - 382440970.4
16s ribosomal rnaNot AvailableNot AvailablePositive3983 - 5513Not Available
hypothetical proteinASD88_00025Not AvailableNegative3794 - 550958471.5
hypothetical proteinASD88_00030Not AvailableNegative5517 - 704353191.8
hypothetical proteinASD88_00035Not AvailableNegative7065 - 799731553.7

Displaying genes 1 – 10 of 5195 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

299 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000288aminohydroquinoneC6H7NO2Chemical structure of aminohydroquinoneNot available
Average125.127Da
Monoisotopic125.0476785Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da

Displaying 1–10 of 299 metabolites

Health Effects

No health effects information available for this bacterium.