Leifsonia sp. Root4

Bacilli

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Microbacteriaceae

Genus

Leifsonia

Description

Leifsonia sp. Root4 is characterized by its bacilli shape and possesses a single replicon. This unique combination of morphological and genetic traits positions it within the broader context of the Leifsonia genus, which is known for its diverse ecological roles. The accession number for Leifsonia sp. Root4 is LMDN00000000.1, which provides a reference for its genetic sequencing and classification in microbial databases. The bacilli shape is significant as it often relates to the organism's physiological adaptations and ecological interactions. Bacteria in this shape can exhibit various growth patterns and may have specific advantages in nutrient acquisition and survival in different environments. Furthermore, the presence of a single replicon is indicative of a streamlined genome, which can suggest a specialization or adaptation to particular ecological niches. From a biological and ecological perspective, understanding the traits of Leifsonia sp. Root4, particularly its morphology and genomic structure, can provide insights into its potential roles in soil ecosystems, including nutrient cycling and interactions with plant roots. The specific adaptations of bacilli-shaped bacteria like Leifsonia sp. may enhance their effectiveness in these processes, thereby contributing to soil health and plant growth.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrobacteriaceae
GenusLeifsonia
SpeciesLeifsonia sp. Root4
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeBacilli
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Leifsonia sp. Root4 contig_7, whole genome shotgun sequence.

Gene Summary

Adenine Count

624138 bp

Thymine Count

625490 bp

Guanine Count

1310020 bp

Cytosine Count

1307662 bp

Genome Length

3867359 bp

Protein-coding Genes

3376 genes

Non-Coding Genes

72 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Hnh endonucleaseASC66_01210Not AvailablePositive247990 - 2482389111.79
hypothetical proteinASC66_01215Not AvailablePositive248326 - 2485718777.17
Terminase large subunitASC66_01220Not AvailablePositive248747 - 25005747702.1
Portal proteinASC66_01225Not AvailablePositive250054 - 25151152798.6
Capsid maturation proteaseASC66_01230Not AvailablePositive251511 - 25223925916.8
Hypothetical proteinASC66_01235Not AvailablePositive252330 - 25288119127.1
Major capsid proteinASC66_01240Not AvailablePositive252885 - 25408741589.8
Hypothetical proteinASC66_01245Not AvailablePositive254154 - 25457615130.8
hypothetical proteinASC66_01250Not AvailablePositive254913 - 2551588811.74
Head-to-tail connector complex proteinASC66_01255Not AvailablePositive255155 - 25552313121.9

Displaying genes 1 – 10 of 3448 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

246 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000275keto-D-sorboseC6H12O6Chemical structure of keto-D-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da

Displaying 1–10 of 246 metabolites

Health Effects

No health effects information available for this bacterium.