Sphingopyxis sp. Root1497

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingopyxidaceae

Genus

Sphingopyxis

Description

Sphingopyxis sp. Root1497 is characterized as a rod-shaped bacterium. It possesses a single replicon, indicating a streamlined genomic structure that may facilitate efficient replication and adaptation. The strain is cataloged under the accession number LMGF00000000.1, which provides a reference point for researchers looking to access its genomic data and further investigate its properties. The rod shape of Sphingopyxis sp. Root1497 suggests a potential for motility and adaptability in various environments. This morphology is often associated with bacteria that thrive in diverse ecological niches, which may include soil and water habitats. The single replicon may confer advantages in terms of genetic stability and adaptability, allowing the organism to respond effectively to environmental changes. In summary, Sphingopyxis sp. Root1497 exhibits a unique combination of morphology and genomic structure that can provide insights into its ecological role. The rod shape may enhance its survival in competitive environments, while the presence of a single replicon could indicate a specialized adaptation strategy. Understanding these traits can contribute to a better comprehension of microbial diversity and function within their ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingopyxidaceae
GenusSphingopyxis
SpeciesSphingopyxis sp. Root1497
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingopyxis sp. Root1497


Gene Summary

Adenine Count

815286 bp

Thymine Count

824856 bp

Guanine Count

1585022 bp

Cytosine Count

1575320 bp

Genome Length

4801179 bp

Protein-coding Genes

4369 genes

Non-Coding Genes

68 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Gene transfer aget (gta) orfg9-like phage major tail proteinASD67_04105Not AvailableNegative875294 - 87570114220.7
hypothetical proteinASD67_04110Not AvailablePositive875750 - 87608812119.1
hypothetical proteinASD67_04115Not AvailableNegative876165 - 87655413162.8
hypothetical proteinASD67_04120Not AvailableNegative876551 - 87709919532.5
hypothetical proteinASD67_04130Not AvailableNegative877556 - 8777356101.33
Tail fibers proteinASD67_04135Not AvailableNegative877732 - 87910546076.8
hypothetical proteinASD67_04140Not AvailablePositive879186 - 87974320296.5
Putative major capsid proteinASD67_04145Not AvailableNegative879850 - 88098039172.3
Putative prohead proteaseASD67_04150Not AvailableNegative881073 - 88144712916.7
Hypothetical proteinASD67_04155Not AvailableNegative881504 - 88181210706.1

Displaying genes 1 – 10 of 4437 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

359 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000338(1R,4R,5R)-5-hydroxycamphorC10H16O2Chemical structure of (1R,4R,5R)-5-hydroxycamphorNot available
Average168.2328Da
Monoisotopic168.115029756Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da

Displaying 1–10 of 359 metabolites

Health Effects

No health effects information available for this bacterium.