Nocardioides sp. Root140

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Propionibacteriales

Family

Nocardioidaceae

Genus

Nocardioides

Description

Nocardioides sp. Root140 is characterized by a single replicon, indicating a streamlined genomic structure that may contribute to its adaptability in various environments. The organism is cataloged under the accession number LMFI00000000.1, which serves as a reference for genomic and taxonomic studies. As a member of the Nocardioides genus, this species is likely to exhibit traits common to actinobacteria, such as the ability to degrade complex organic compounds and contribute to soil health. Actinobacteria are often involved in biogeochemical cycles and play significant roles in nutrient cycling, particularly in terrestrial ecosystems. The presence of only one replicon suggests a potential for efficient replication and metabolism, which may enhance its survival in competitive soil environments. This trait could also imply that Nocardioides sp. Root140 is well-adapted to its ecological niche, possibly engaging in symbiotic relationships with plants or other soil microorganisms. In summary, Nocardioides sp. Root140, with its single replicon and classification under the accession LMFI00000000.1, highlights the diversity and ecological significance of actinobacteria in soil ecosystems. Its potential role in organic matter degradation and nutrient cycling emphasizes the importance of this organism in maintaining soil health and supporting plant growth.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderPropionibacteriales
FamilyNocardioidaceae
GenusNocardioides
SpeciesNocardioides sp. Root140
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Nocardioides sp. Root140


Gene Summary

Adenine Count

833292 bp

Thymine Count

830624 bp

Guanine Count

1884627 bp

Cytosine Count

1882998 bp

Genome Length

5431823 bp

Protein-coding Genes

4989 genes

Non-Coding Genes

51 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
16s ribosomal rnaNot AvailableNot AvailablePositive409 - 1935Not Available
hypothetical proteinASD30_00005Not AvailableNegative34 - 138350079.8
hypothetical proteinASD30_00010Not AvailablePositive1994 - 22097831.19
23s ribosomal rnaNot AvailableNot AvailablePositive2236 - 5365Not Available
hypothetical proteinASD30_00015Not AvailableNegative2394 - 299921329.6
hypothetical proteinASD30_00020Not AvailablePositive3120 - 399830570.6
o-succinylbenzoate--coa ligaseASD30_00025Not AvailablePositive4024 - 555053821.7
5s ribosomal rnaNot AvailableNot AvailablePositive5486 - 5602Not Available
hypothetical proteinASD30_00030Not AvailablePositive5543 - 635828416.8
acetyl-coa acetyltransferaseASD30_00035Not AvailablePositive6355 - 753040778.4

Displaying genes 1 – 10 of 5040 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

402 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da

Displaying 1–10 of 402 metabolites

Health Effects

No health effects information available for this bacterium.