Phenylobacterium sp. Root1277

Gram-negativeRod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Caulobacterales

Family

Caulobacteraceae

Genus

Phenylobacterium

Description

Phenylobacterium sp. Root1277 is a Gram-negative, rod-shaped bacterium characterized by the presence of flagella, which suggests it has the capability for motility. This organism possesses a single replicon, indicating a streamlined genomic structure that may contribute to its adaptability in various environments. The accession number for this strain is LMDZ00000000.1, which serves as a reference for genetic and genomic studies. The Gram-negative nature of Phenylobacterium sp. Root1277 implies that it has a distinctive cell wall structure, which typically includes an outer membrane composed of lipopolysaccharides. This trait can influence the bacterium's interaction with its environment, including its resistance to certain antibiotics and its role in ecological niches. The presence of flagella is significant as it allows for movement, which may facilitate the bacterium's ability to colonize specific environments or substrates. This motility can play a crucial role in ecological interactions, such as nutrient acquisition and competition with other microorganisms. In summary, Phenylobacterium sp. Root1277 exhibits key traits that facilitate its survival and adaptability. Its Gram-negative status and motility through flagella contribute to its ecological roles, potentially influencing microbial community dynamics and interactions in its habitat. Understanding these traits can provide insights into the ecological functions of this and similar bacteria within their environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderCaulobacterales
FamilyCaulobacteraceae
GenusPhenylobacterium
SpeciesPhenylobacterium sp. Root1277
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Phenylobacterium sp. Root1277
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Phenylobacterium sp. Root1277 contig_9, whole genome shotgun

Gene Summary

Adenine Count

689356 bp

Thymine Count

677863 bp

Guanine Count

1440331 bp

Cytosine Count

1459998 bp

Genome Length

4267604 bp

Protein-coding Genes

4022 genes

Non-Coding Genes

50 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinASC73_00060Not AvailableNegative13803 - 1508944188.4
hypothetical proteinASC73_00065Not AvailableNegative15109 - 1544112084.3
hypothetical proteinASC73_00070P42065Negative15446 - 1644735700.2
hypothetical proteinASC73_00075Q53193Negative16444 - 1743035620.7
abc transporter permeaseASC73_00080P42063Negative17427 - 1825428910.4
abc transporter permeaseASC73_00085P42062Negative18259 - 1918233143.5
hypothetical proteinASC73_00095P0C2M9Negative20365 - 2249178706.2
hypothetical proteinASC73_00100A5VU91Negative22800 - 2434456178.5
hypothetical proteinASC73_00105Not AvailableNegative24433 - 2489716345.7
hypothetical proteinASC73_00110Not AvailableNegative24954 - 2559823486.0

Displaying genes 11 – 20 of 4072 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

337 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000430hercynineC9H15N3O2Chemical structure of hercynineNot available
Average197.238Da
Monoisotopic197.1164267Da
BASm0000523nonane-4,6-dioneC9H16O2Chemical structure of nonane-4,6-dioneNot available
Average156.225Da
Monoisotopic156.115029755Da

Displaying 1–10 of 337 metabolites

Health Effects

No health effects information available for this bacterium.