Nocardioides sp. Soil777

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Propionibacteriales

Family

Nocardioidaceae

Genus

Nocardioides

Description

Nocardioides sp. Soil777 is characterized by possessing a single replicon, which indicates a streamlined genomic structure that may contribute to its adaptability in various environments. The organism is cataloged under the accession number LMSN00000000.1, providing a reference for researchers seeking to study its genetic and functional traits further. As a member of the genus Nocardioides, this strain is likely to be involved in the degradation of complex organic materials, a trait common among its relatives. This capability may play a significant role in soil health and nutrient cycling, suggesting that Nocardioides sp. Soil777 could be important for maintaining ecological balance in its habitat. Although specific biochemical pathways and ecological interactions of Nocardioides sp. Soil777 are not detailed, the presence of a single replicon may imply a specialization that allows it to thrive in particular soil conditions. The simplified genetic architecture could enhance its efficiency in utilizing available resources, positioning it as a potential contributor to soil microbiomes. In summary, Nocardioides sp. Soil777, with its single replicon and unique genetic profile, exemplifies the adaptive strategies of soil bacteria. Its potential role in organic material degradation highlights the importance of such microorganisms in promoting soil fertility and ecological sustainability.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderPropionibacteriales
FamilyNocardioidaceae
GenusNocardioides
SpeciesNocardioides sp. Soil777
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Nocardioides sp. Soil777


Gene Summary

Adenine Count

656823 bp

Thymine Count

657210 bp

Guanine Count

1666212 bp

Cytosine Count

1670443 bp

Genome Length

4650914 bp

Protein-coding Genes

4316 genes

Non-Coding Genes

51 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
5s ribosomal rnaNot AvailableNot AvailablePositive48 - 164Not Available
23s ribosomal rnaNot AvailableNot AvailablePositive362 - 3466Not Available
dna replication proteinASG88_00005Not AvailableNegative198 - 103429667.2
transposaseASG88_00010Not AvailableNegative1034 - 226345959.2
16s ribosomal rnaNot AvailableNot AvailablePositive3832 - 5355Not Available
hypothetical proteinASG88_00020Not AvailableNegative3813 - 413910847.5
pesticidal protein cry26aaASG88_00025Not AvailableNegative4136 - 43878602.87
hypothetical proteinASG88_00030Not AvailableNegative4414 - 479714019.2
cation:proton antiporterASG88_00035Q9RGZ2Negative4794 - 637453826.6
hypothetical proteinASG88_00040O05260Negative6371 - 672712177.9

Displaying genes 1 – 10 of 4367 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

315 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002654-formylbenzenesulfonateC7H5O4SChemical structure of 4-formylbenzenesulfonateNot available
Average185.17Da
Monoisotopic184.991403395Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000275keto-D-sorboseC6H12O6Chemical structure of keto-D-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da

Displaying 1–10 of 315 metabolites

Health Effects

No health effects information available for this bacterium.