Phycicoccus sp. Soil748

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Intrasporangiaceae

Genus

Phycicoccus

Description

Phycicoccus sp. Soil748 is a microbial organism with a single replicon, indicating a streamlined genomic structure. Its genetic material is cataloged under the accession number LMSC00000000.1, which provides a reference for its genomic sequence and related studies. As a member of the genus Phycicoccus, this microorganism is likely to exhibit characteristics common to its genus, such as potential roles in various ecological niches. While specific traits related to its metabolism, habitat preferences, or interactions with other organisms are not detailed, the presence of a single replicon suggests a potentially efficient mechanism for cellular processes. The ecological insight into Phycicoccus sp. Soil748 may relate to its adaptability and survival in soil environments. Microorganisms in soil play crucial roles in nutrient cycling, decomposition, and maintaining soil health. The streamlined genomic structure of Phycicoccus sp. Soil748 could enable it to thrive in diverse environmental conditions, contributing to the complex interactions within soil microbiomes. Understanding the traits and genomic framework of Phycicoccus sp. Soil748 can enhance our knowledge of soil ecosystems and the microbial diversity they harbor.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyIntrasporangiaceae
GenusPhycicoccus
SpeciesPhycicoccus sp. Soil748
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Phycicoccus sp. Soil748 contig_9, whole genome shotgun sequence.

Gene Summary

Adenine Count

556285 bp

Thymine Count

559402 bp

Guanine Count

1427491 bp

Cytosine Count

1429447 bp

Genome Length

3974301 bp

Protein-coding Genes

3556 genes

Non-Coding Genes

48 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
5s ribosomal rnaNot AvailableNot AvailablePositive25 - 141Not Available
23s ribosomal rnaNot AvailableNot AvailablePositive219 - 3178Not Available
exopolyphosphataseASG70_16155L7N5A6Negative465 - 144233764.9
hypothetical proteinASG70_16160Not AvailableNegative1460 - 199318345.8
hypothetical proteinASG70_16165Not AvailableNegative1990 - 237913988.7
enolaseASG70_16170Q9F2Q3Negative2634 - 392345769.9
hypothetical proteinASG70_16175Not AvailableNegative4065 - 449315054.0
pseudouridine-5-phosphate glycosidaseASG70_16180A1SQN1Negative4612 - 553532116.7
carbohydrate kinaseASG70_16185P33020Negative5640 - 677338915.6
2'-5' rna ligaseASG70_16190Not AvailablePositive6848 - 737218661.5

Displaying genes 1 – 10 of 3604 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

272 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da

Displaying 1–10 of 272 metabolites

Health Effects

No health effects information available for this bacterium.