Microbacterium sp. Leaf288

Rod

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Microbacteriaceae

Genus

Microbacterium

Description

Microbacterium sp. Leaf288 is characterized as a rod-shaped bacterium. It possesses a single replicon, indicating a streamlined genomic organization that is typical for many microorganisms within the Microbacterium genus. The strain is cataloged under the accession number LMNI00000000.1, which provides a reference for researchers seeking to access genomic data and further investigate its biological properties. The rod shape of Microbacterium sp. Leaf288 suggests potential adaptations for nutrient absorption and motility, which are advantageous traits in various ecological niches. This morphology is commonly associated with bacteria that thrive in diverse environments, including soil and plant-associated habitats. Rod-shaped bacteria typically exhibit a high surface-to-volume ratio, which can enhance their ability to uptake nutrients, a critical factor for survival in competitive ecosystems. Understanding the specific ecological role of Microbacterium sp. Leaf288 may offer insights into its interactions with plant systems, particularly if it is associated with leaf tissues, as suggested by its name. Bacteria in the Microbacterium genus are often involved in the degradation of organic materials and may play a role in nutrient cycling. Therefore, studying Microbacterium sp. Leaf288 could provide valuable information on its contributions to soil health and plant microbiomes, highlighting its potential importance in ecological balance and sustainability.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrobacteriaceae
GenusMicrobacterium
SpeciesMicrobacterium sp. Leaf288
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Microbacterium sp. Leaf288


Gene Summary

Adenine Count

709308 bp

Thymine Count

715124 bp

Guanine Count

1661004 bp

Cytosine Count

1662309 bp

Genome Length

4747796 bp

Protein-coding Genes

4020 genes

Non-Coding Genes

52 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
transposaseASF40_00005Not AvailablePositive57 - 98936827.8
deaminaseASF40_00010Not AvailableNegative1363 - 192020620.5
hypothetical proteinASF40_00015Not AvailablePositive2211 - 417567521.4
hypothetical proteinASF40_00020Not AvailablePositive4362 - 483816923.7
transcriptional regulatorASF40_00025Not AvailablePositive4838 - 50838643.51
hypothetical proteinASF40_00030Not AvailablePositive5080 - 8913127826.0
amino acid-binding act proteinASF40_00035Not AvailableNegative8923 - 943818140.6
hypothetical proteinASF40_00040Not AvailableNegative9472 - 1010723271.5
hypothetical proteinASF40_00045Not AvailablePositive10310 - 1210963245.7
hypothetical proteinASF40_00050Not AvailableNegative12203 - 1256813196.6

Displaying genes 1 – 10 of 4072 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

312 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000275keto-D-sorboseC6H12O6Chemical structure of keto-D-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da

Displaying 1–10 of 312 metabolites

Health Effects

No health effects information available for this bacterium.