Rhodococcus sp. Leaf247

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Nocardiaceae

Genus

Rhodococcus

Description

Rhodococcus sp. Leaf247 is a fascinating bacterium notable for its single replicon structure and presence of flagella, which suggests motility capabilities. The genetic information for this strain is cataloged under the accession number LMRP00000000.1, indicating its identification and characterization in genomic databases. Rhodococcus species are known for their versatility and ability to degrade a wide array of organic compounds, making them significant in bioremediation and environmental microbiology. The flagella presence in Rhodococcus sp. Leaf247 may enhance its ability to move towards nutrients or away from harmful substances, potentially increasing its survival and efficacy in diverse ecological niches. Given the strain's characteristics, Rhodococcus sp. Leaf247 could play an important role in soil and environmental health, particularly in areas contaminated with organic pollutants. Its motility might facilitate interactions with other microorganisms and contribute to complex soil ecosystems. Further studies on its metabolic pathways and ecological interactions could provide deeper insights into its potential applications in bioremediation processes and sustainable environmental management.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyNocardiaceae
GenusRhodococcus
SpeciesRhodococcus sp. Leaf247
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhodococcus sp. Leaf247 contig_5, whole genome shotgun sequence.

Gene Summary

Adenine Count

747212 bp

Thymine Count

742432 bp

Guanine Count

1507134 bp

Cytosine Count

1536760 bp

Genome Length

4533613 bp

Protein-coding Genes

4066 genes

Non-Coding Genes

51 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinASG64_00160Not AvailablePositive39272 - 395028232.0
30s ribosomal protein s1ASG64_00165A0QYY6Negative39661 - 4113954001.4
sam-dependent methyltransferaseASG64_00170Not AvailablePositive41501 - 4228628446.2
3-isopropylmalate dehydrogenaseASG64_00175O29627Negative42292 - 4341039216.6
hypothetical proteinASG64_00180Not AvailablePositive43431 - 4397319810.5
hypothetical proteinASG64_00185Not AvailableNegative43963 - 4485330743.9
arac family transcriptional regulatorASG64_00195P49322Positive45063 - 4606135880.8
thioredoxinASG64_00200Q9RD25Positive46164 - 4653813453.8
dna polymerase iASG64_00205P0A551Negative46609 - 4927297436.0
abc transporter permeaseASG64_00210Not AvailablePositive49524 - 5086146670.5

Displaying genes 31 – 40 of 4117 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

384 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da

Displaying 1–10 of 384 metabolites

Health Effects

No health effects information available for this bacterium.