Pedobacter sp. Leaf194

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter sp. Leaf194 is a bacterial strain characterized by the presence of flagella, which are structures that facilitate motility. This trait suggests that the organism can move through its environment, potentially allowing it to explore various ecological niches or respond to changes in its surroundings. The genome of Pedobacter sp. Leaf194 is represented by a single replicon, indicating a streamlined genetic organization. This can be an advantage for the organism, as it may require fewer resources for replication and maintenance compared to those with multiple replicons. The strain is cataloged under the accession number LMPU00000000.1, which provides a reference point for researchers to access genomic data and further characterize its genetic makeup. In terms of ecological insight, the motility provided by flagella may play a significant role in the organism's ability to colonize different environments, including soil and plant surfaces. This capability is essential for survival and may contribute to its role in nutrient cycling or interactions with other microorganisms in its habitat. Understanding the traits of Pedobacter sp. Leaf194 can offer valuable information on its ecological functions and potential applications in microbiology and biotechnology.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter sp. Leaf194
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter sp. Leaf194 contig_9, whole genome shotgun sequence.

Gene Summary

Adenine Count

1391274 bp

Thymine Count

1386351 bp

Guanine Count

894564 bp

Cytosine Count

900879 bp

Genome Length

4573096 bp

Protein-coding Genes

3909 genes

Non-Coding Genes

51 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
3-dehydroquinate synthaseASG14_00155E3FKM2Negative30333 - 3151443776.9
polyprenyltransferaseASG14_00160Not AvailableNegative31550 - 3240430298.1
hydrolase tatdASG14_00165Not AvailableNegative32441 - 3342736860.7
hypothetical proteinASG14_00170Not AvailableNegative33461 - 3429130739.7
hypothetical proteinASG14_00175Not AvailableNegative34308 - 3468814235.8
hypothetical proteinASG14_00180Not AvailableNegative34926 - 3545919505.2
hypothetical proteinASG14_00185Not AvailableNegative36308 - 364936675.84
hypothetical proteinASG14_00190Not AvailableNegative36484 - 3722428087.0
cytochrome cASG14_00195Not AvailableNegative37199 - 3817335454.9
Ncrna_class:rnase_p_rnaNot AvailableNot AvailablePositive38415 - 38807Not Available

Displaying genes 31 – 40 of 3960 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

200 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000047sophoroseC12H22O11Chemical structure of sophoroseNot available
Average342.297Da
Monoisotopic342.116211528Da
BASm0000122echinenoneC40H54OChemical structure of echinenoneNot available
Average550.871Da
Monoisotopic550.417466359Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000305tetrathionateO6S4Chemical structure of tetrathionateNot available
Average224.24Da
Monoisotopic223.8588696Da
BASm0000315acetylpyruvateC5H6O4Chemical structure of acetylpyruvateNot available
Average130.099Da
Monoisotopic130.0266087Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da

Displaying 1–10 of 200 metabolites

Health Effects

No health effects information available for this bacterium.