Rathayibacter tanaceti

Rod

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Microbacteriaceae

Genus

Rathayibacter

Description

Rathayibacter tanaceti is a gram-positive bacterium characterized by its rod shape. It is notable for having a single replicon, which is indicative of its genomic organization. The strain is cataloged under the accession number LIIN00000000.1, providing a reference for researchers interested in studying its genetic and phenotypic properties. As a member of the Rathayibacter genus, R. tanaceti is likely involved in interactions with host plants, specifically those within the Asteraceae family, as indicated by the genus's known associations with plant pathogens. The ecological role of R. tanaceti may involve influencing plant health and development, which is an important aspect of understanding microbial interactions within agricultural ecosystems. Given its gram-positive nature, R. tanaceti may possess features such as a thick peptidoglycan layer, which could contribute to its resilience in various environments. This trait is common among bacteria that interact closely with plants, as it may protect them from environmental stresses. Overall, Rathayibacter tanaceti represents a specific lineage within microbial ecology that warrants further investigation, particularly regarding its potential impact on plant systems and agricultural practices. Understanding its biology could provide insights into managing plant health and addressing challenges related to crop production.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrobacteriaceae
GenusRathayibacter
SpeciesRathayibacter tanaceti
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rathayibacter tanaceti strain VKM Ac-2596 ACH61_contig000331,

Gene Summary

Adenine Count

465881 bp

Thymine Count

461263 bp

Guanine Count

1127750 bp

Cytosine Count

1113990 bp

Genome Length

3168884 bp

Protein-coding Genes

3209 genes

Non-Coding Genes

50 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
5-aminovalerate aminotransferase davtACH61_00629Not AvailablePositive596552 - 59791347014.4
l-asparaginase iiACH61_00630Not AvailablePositive598038 - 59903334124.3
inner membrane abc transporter permease protein ydcvACH61_00631Not AvailableNegative599068 - 59952916145.0
spermidine/putrescine abc transporter membrane proteinACH61_00632Not AvailableNegative599469 - 59994217109.7
putrescine transport system permease protein pothACH61_00633Not AvailableNegative599939 - 60085633055.8
spermidine/putrescine import atp-binding protein potaACH61_00634Not AvailableNegative600859 - 60205842598.3
spermidine/putrescine-binding periplasmic protein precursorACH61_00635Not AvailableNegative602058 - 60328444985.7
hypothetical proteinACH61_00636Not AvailableNegative603481 - 60387013759.5
serine/threonine phosphatase stpACH61_00637Not AvailableNegative604226 - 60505028483.3
regulatory protein asncACH61_00638Not AvailablePositive605252 - 60573117595.2

Displaying genes 631 – 640 of 3259 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.