Pedobacter sp. BMA

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter sp. BMA is a bacterial species characterized by its possession of flagella, which suggests motility capabilities. This trait can be significant for its ecological interactions and potential colonization abilities in various environments. The organism has a single replicon, indicating a streamlined genomic architecture that may facilitate efficient replication and cellular processes. The sequence information for Pedobacter sp. BMA is available under the accession number LECU00000000.1. This data can be utilized for further genomic studies and comparative analysis with other members of the Pedobacter genus or related taxa. Understanding the motility of Pedobacter sp. BMA through its flagella may provide insights into its ecological role, potentially influencing its niche adaptation and interactions with other microbial communities. As motile bacteria often engage in dynamic relationships with their environment, this trait could allow Pedobacter sp. BMA to exploit nutrient sources or evade predation more effectively. Overall, the presence of flagella alongside its genomic features positions Pedobacter sp. BMA as an interesting subject for further research in microbial ecology and evolution.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter sp. BMA
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter sp. BMA contig20, whole genome shotgun sequence.

Gene Summary

Adenine Count

1502212 bp

Thymine Count

1496821 bp

Guanine Count

1000558 bp

Cytosine Count

1041043 bp

Genome Length

5040634 bp

Protein-coding Genes

4055 genes

Non-Coding Genes

56 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinAB669_14675Not AvailablePositive3467405 - 346785116537.3
hypothetical proteinAB669_14680A6GWV6Positive3467973 - 346843717291.1
transcription elongation factor nusaAB669_14685P48514Positive3468439 - 346968347076.9
translation initiation factor if-2AB669_14690Q11PK5Positive3469744 - 3472788109393.0
hypothetical proteinAB669_14695Not AvailableNegative3472883 - 347395642558.9
hypothetical proteinAB669_14705Not AvailableNegative3474970 - 347570127894.8
hypothetical proteinAB669_14715Not AvailableNegative3476645 - 347745131402.7
hypothetical proteinAB669_14720Not AvailablePositive3477549 - 347878747355.9
antibiotic abc transporter atp-binding proteinAB669_14725Q6AJW3Negative3478784 - 348061667738.4
membrane proteinAB669_14730Not AvailablePositive3480787 - 348197445583.8

Displaying genes 2831 – 2840 of 3123 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

163 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000047sophoroseC12H22O11Chemical structure of sophoroseNot available
Average342.297Da
Monoisotopic342.116211528Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000315acetylpyruvateC5H6O4Chemical structure of acetylpyruvateNot available
Average130.099Da
Monoisotopic130.0266087Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000430hercynineC9H15N3O2Chemical structure of hercynineNot available
Average197.238Da
Monoisotopic197.1164267Da
BASm00006473-hydroxypropanoateC3H5O3Chemical structure of 3-hydroxypropanoateNot available
Average89.071Da
Monoisotopic89.0244176Da

Displaying 1–10 of 163 metabolites

Health Effects

No health effects information available for this bacterium.