Hoeflea sp. IMCC20628

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Hoeflea

Description

Hoeflea sp. IMCC20628 is characterized by having three distinct replicons. This polyreplicon structure may contribute to its adaptability and genetic diversity, allowing for potential resilience in various environmental conditions. The organism is represented by three accessions in genomic databases: NZ_CP011481.1, NZ_CP011480.1, and NZ_CP011479.1. These accessions provide insight into the genomic framework of Hoeflea sp. IMCC20628, which can be crucial for understanding its metabolic capabilities and ecological roles. The presence of multiple replicons in Hoeflea sp. IMCC20628 may suggest a complex regulatory mechanism governing gene expression and replication, which could influence its ecological interactions. This trait may facilitate horizontal gene transfer, allowing the organism to acquire beneficial traits from other microbes, thereby enhancing its adaptability to changing environments. Biologically, the adaptability and potential for horizontal gene transfer inherent in Hoeflea sp. IMCC20628 could be significant in microbial communities, particularly in nutrient cycling and biodegradation processes. Understanding the genomic characteristics of this organism can provide valuable insights into its ecological functions and contributions to the microbiome in its native habitat.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusHoeflea
SpeciesHoeflea sp. IMCC20628
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Hoeflea sp. IMCC20628 plasmid unnamed, complete sequence.

Gene Summary

Adenine Count

26979 bp

Thymine Count

26847 bp

Guanine Count

34804 bp

Cytosine Count

34790 bp

Genome Length

123420 bp

Protein-coding Genes

119 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ferredoxin fdxaIMCC20628_RS22145P0CY91Positive4717623 - 471796112683.8
card family transcriptional regulatorIMCC20628_RS22150A0R561Positive4718583 - 471915221308.5
rna polymerase factor sigma-32IMCC20628_RS22155P50512Positive4719385 - 472025432767.2
m48 family metalloproteaseIMCC20628_RS22160P66951Negative4720266 - 472172652441.4
atp-binding cassette domain-containing proteinIMCC20628_RS22165Q92L31Negative4721916 - 472264125338.7
thiamine/thiamine pyrophosphate abc transporter permease thipIMCC20628_RS22170Q2YLW7Negative4722638 - 472426056209.6
thiamine abc transporter substrate binding subunitIMCC20628_RS22175Q8FYV1Negative4724271 - 472528136673.4
thiamine diphosphokinaseIMCC20628_RS22180Not AvailablePositive4725493 - 472614622636.2
abc-f family atp-binding cassette domain-containing proteinIMCC20628_RS22185Q45978Positive4726149 - 472798167541.4
hypothetical proteinIMCC20628_RS22190Not AvailableNegative4728066 - 472844014059.1

Displaying genes 4721 – 4730 of 4847 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

3 records
Metabolite IDMetabolite nameStructureCAS number
BASm00005275-oxopentanoateC5H7O3Chemical structure of 5-oxopentanoateNot available
Average115.109Da
Monoisotopic115.040067665Da
BASm0002826(2R)-3-phospho-glyceroyl phosphateC3H4O10P2Chemical structure of (2R)-3-phospho-glyceroyl phosphateNot available
Average262.005Da
Monoisotopic261.9301646Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da

Displaying 1–3 of 3 metabolites

Health Effects

No health effects information available for this bacterium.