Hoeflea sp. IMCC20628

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Hoeflea

Description

Hoeflea sp. IMCC20628 is characterized by having three distinct replicons. This polyreplicon structure may contribute to its adaptability and genetic diversity, allowing for potential resilience in various environmental conditions. The organism is represented by three accessions in genomic databases: NZ_CP011481.1, NZ_CP011480.1, and NZ_CP011479.1. These accessions provide insight into the genomic framework of Hoeflea sp. IMCC20628, which can be crucial for understanding its metabolic capabilities and ecological roles. The presence of multiple replicons in Hoeflea sp. IMCC20628 may suggest a complex regulatory mechanism governing gene expression and replication, which could influence its ecological interactions. This trait may facilitate horizontal gene transfer, allowing the organism to acquire beneficial traits from other microbes, thereby enhancing its adaptability to changing environments. Biologically, the adaptability and potential for horizontal gene transfer inherent in Hoeflea sp. IMCC20628 could be significant in microbial communities, particularly in nutrient cycling and biodegradation processes. Understanding the genomic characteristics of this organism can provide valuable insights into its ecological functions and contributions to the microbiome in its native habitat.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusHoeflea
SpeciesHoeflea sp. IMCC20628
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Hoeflea sp. IMCC20628 plasmid unnamed, complete sequence.

Gene Summary

Adenine Count

32286 bp

Thymine Count

33573 bp

Guanine Count

44629 bp

Cytosine Count

43583 bp

Genome Length

154071 bp

Protein-coding Genes

155 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
iron-containing alcohol dehydrogenaseIMCC20628_RS23525A4IP64Negative1327 - 248440255.9
sodium:solute symporter family transporterIMCC20628_RS23530Not AvailableNegative2516 - 446568644.9
hypothetical proteinIMCC20628_RS23535Not AvailableNegative4462 - 488714988.3
flotillin family proteinIMCC20628_RS23540P77306Negative4946 - 663462417.4
bacteriorhodopsinIMCC20628_RS23545Q9F7P4Negative6692 - 739325553.5
abc transporter permeaseIMCC20628_RS23550P44736Negative7444 - 881148578.2
transposaseIMCC20628_RS23555P0AGI3Negative9258 - 1015730958.9
sugar abc transporter atp-binding proteinIMCC20628_RS23560Q1GHE5Negative10238 - 1206465514.9
abc transporter substrate-binding proteinIMCC20628_RS23565Not AvailableNegative12131 - 1330642100.1
n-acyl homoserine lactonase attmIMCC20628_RS23570A8IQD2Negative13461 - 1423128636.9

Displaying genes 1 – 10 of 4847 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

8 records
Metabolite IDMetabolite nameStructureCAS number
BASm00007052-dehydro-3-deoxy-D-arabinonateC5H7O5Chemical structure of 2-dehydro-3-deoxy-D-arabinonateNot available
Average147.107Da
Monoisotopic147.0298969Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0002759dTDP-beta-L-rhamnoseC16H24N2O15P2Not availableNot available
Average546.316Da
Monoisotopic546.066289237Da
BASm0002963meso-2,6-diaminoheptanedioateC7H14N2O4Chemical structure of meso-2,6-diaminoheptanedioate922-54-3
Average190.1971Da
Monoisotopic190.0953569Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm0007610(E)-feruloyl-CoAC31H40N7O19P3SChemical structure of (E)-feruloyl-CoANot available
Average939.67Da
Monoisotopic939.1334486Da
BASm00081422-hydroxy-2-methylpropanalC4H8O2Chemical structure of 2-hydroxy-2-methylpropanalNot available
Average88.106Da
Monoisotopic88.0524295Da

Displaying 1–8 of 8 metabolites

Health Effects

No health effects information available for this bacterium.