Hoeflea sp. IMCC20628

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Hoeflea

Description

Hoeflea sp. IMCC20628 is characterized by having three distinct replicons. This polyreplicon structure may contribute to its adaptability and genetic diversity, allowing for potential resilience in various environmental conditions. The organism is represented by three accessions in genomic databases: NZ_CP011481.1, NZ_CP011480.1, and NZ_CP011479.1. These accessions provide insight into the genomic framework of Hoeflea sp. IMCC20628, which can be crucial for understanding its metabolic capabilities and ecological roles. The presence of multiple replicons in Hoeflea sp. IMCC20628 may suggest a complex regulatory mechanism governing gene expression and replication, which could influence its ecological interactions. This trait may facilitate horizontal gene transfer, allowing the organism to acquire beneficial traits from other microbes, thereby enhancing its adaptability to changing environments. Biologically, the adaptability and potential for horizontal gene transfer inherent in Hoeflea sp. IMCC20628 could be significant in microbial communities, particularly in nutrient cycling and biodegradation processes. Understanding the genomic characteristics of this organism can provide valuable insights into its ecological functions and contributions to the microbiome in its native habitat.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusHoeflea
SpeciesHoeflea sp. IMCC20628
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Hoeflea sp. IMCC20628 plasmid unnamed, complete sequence.

Gene Summary

Adenine Count

26979 bp

Thymine Count

26847 bp

Guanine Count

34804 bp

Cytosine Count

34790 bp

Genome Length

123420 bp

Protein-coding Genes

119 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
aconitase x swivel domain-containing proteinIMCC20628_RS13630O27573Positive2862735 - 286315414448.4
yeee/yede family proteinIMCC20628_RS13635Not AvailableNegative2863138 - 286422636880.5
pyruvate, phosphate dikinaseIMCC20628_RS13640Q59754Negative2864404 - 286707695831.7
degt/dnrj/eryc1/strs aminotransferase family proteinIMCC20628_RS13645Q9HZ76Positive2867535 - 286867740814.6
res family nad+ phosphorylaseIMCC20628_RS13650Not AvailableNegative2868692 - 286937224855.6
antitoxin xre/mbca/pars toxin-binding domain-containing proteinIMCC20628_RS13655Not AvailableNegative2869369 - 28695697272.85
antitoxin xre-like helix-turn-helix domain-containing proteinIMCC20628_RS25660Not AvailableNegative2869594 - 28697947253.58
chromosome segregation protein smcIMCC20628_RS13660Q6N1B7Negative2869912 - 2873376125194.0
dsba family proteinIMCC20628_RS13665Not AvailableNegative2873464 - 287421927154.5
duf721 domain-containing proteinIMCC20628_RS13670Not AvailableNegative2874394 - 287490618887.8

Displaying genes 3011 – 3020 of 4847 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

3 records
Metabolite IDMetabolite nameStructureCAS number
BASm00005275-oxopentanoateC5H7O3Chemical structure of 5-oxopentanoateNot available
Average115.109Da
Monoisotopic115.040067665Da
BASm0002826(2R)-3-phospho-glyceroyl phosphateC3H4O10P2Chemical structure of (2R)-3-phospho-glyceroyl phosphateNot available
Average262.005Da
Monoisotopic261.9301646Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da

Displaying 1–3 of 3 metabolites

Health Effects

No health effects information available for this bacterium.