Duffyella gerundensis

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Erwiniaceae

Genus

Duffyella

Description

Duffyella gerundensis is characterized by its possession of three replicons. This trait is significant as it may influence its genetic stability and adaptability in various environments. The organism is represented by three accessions in the sequence database: NZ_LN907828.1, NZ_LN907827.1, and NZ_LN907829.1. These accessions provide genomic information that can be utilized for further research into the species' phylogenetic relationships and functional capabilities. The multi-replicon structure could suggest a complex genomic architecture that might facilitate metabolic versatility or resilience under different environmental stresses. Understanding the genetic framework of Duffyella gerundensis can also contribute to ecological insights. The presence of multiple replicons may allow for a rapid response to environmental changes, which is crucial for survival and competition among microbial communities. This adaptability could play a role in its ecological niche, influencing its interactions with other microorganisms and its overall contribution to the ecosystem in which it resides.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyErwiniaceae
GenusDuffyella
SpeciesDuffyella gerundensis
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatrumen
Biotic relationshipNot Available
Host(s)Ovis aries
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Duffyella gerundensis isolate E_g_EM595 chromosome 1, complete

Gene Summary

Adenine Count

843143 bp

Thymine Count

839675 bp

Guanine Count

1046560 bp

Cytosine Count

1045635 bp

Genome Length

3775020 bp

Protein-coding Genes

3338 genes

Non-Coding Genes

148 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
5s ribosomal rnaNot AvailableNot AvailablePositive448722 - 448837Not Available
Trna-thrNot AvailableNot AvailablePositive448853 - 448928Not Available
5s ribosomal rnaNot AvailableNot AvailablePositive448969 - 449084Not Available
hypothetical proteinEM595_RS21335Not AvailablePositive449129 - 4493268004.74
amino acid abc transporter atp-binding proteinEM595_RS02060Not AvailableNegative449397 - 45015828888.2
amino acid abc transporter permeaseEM595_RS02065Not AvailableNegative450167 - 45126741358.5
amino acid abc transporter permeaseEM595_RS02070Not AvailableNegative451278 - 45245643504.0
amino acid abc transporter substrate-binding proteinEM595_RS02075Not AvailableNegative452532 - 45355736933.9
kdo(2)-lipid iv(a) palmitoleoyltransferaseEM595_RS02080Not AvailableNegative453910 - 45483035481.8
dna-binding transcriptional regulator fisEM595_RS02085Not AvailableNegative455033 - 45532911240.6

Displaying genes 461 – 470 of 4135 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

5 records
Metabolite IDMetabolite nameStructureCAS number
BASm00020046-methylsalicylateC8H7O3Chemical structure of 6-methylsalicylateNot available
Average151.142Da
Monoisotopic151.040067665Da
BASm0002963meso-2,6-diaminoheptanedioateC7H14N2O4Chemical structure of meso-2,6-diaminoheptanedioate922-54-3
Average190.1971Da
Monoisotopic190.0953569Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm0003657N-acetyl-D-muramate 6-phosphateC11H17NO11PChemical structure of N-acetyl-D-muramate 6-phosphateNot available
Average370.228Da
Monoisotopic370.0555681Da
BASm00050533',3'-c-di-AMPC20H22N10O12P2Chemical structure of 3',3'-c-di-AMPNot available
Average656.403Da
Monoisotopic656.0904873Da

Displaying 1–5 of 5 metabolites

Health Effects

No health effects information available for this bacterium.