Duffyella gerundensis

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Erwiniaceae

Genus

Duffyella

Description

Duffyella gerundensis is characterized by its possession of three replicons. This trait is significant as it may influence its genetic stability and adaptability in various environments. The organism is represented by three accessions in the sequence database: NZ_LN907828.1, NZ_LN907827.1, and NZ_LN907829.1. These accessions provide genomic information that can be utilized for further research into the species' phylogenetic relationships and functional capabilities. The multi-replicon structure could suggest a complex genomic architecture that might facilitate metabolic versatility or resilience under different environmental stresses. Understanding the genetic framework of Duffyella gerundensis can also contribute to ecological insights. The presence of multiple replicons may allow for a rapid response to environmental changes, which is crucial for survival and competition among microbial communities. This adaptability could play a role in its ecological niche, influencing its interactions with other microorganisms and its overall contribution to the ecosystem in which it resides.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyErwiniaceae
GenusDuffyella
SpeciesDuffyella gerundensis
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatrumen
Biotic relationshipNot Available
Host(s)Ovis aries
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Duffyella gerundensis isolate E_g_EM595 chromosome 1, complete

Gene Summary

Adenine Count

843143 bp

Thymine Count

839675 bp

Guanine Count

1046560 bp

Cytosine Count

1045635 bp

Genome Length

3775020 bp

Protein-coding Genes

3338 genes

Non-Coding Genes

148 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
abc transporter atp-binding proteinEM595_RS17505Not AvailablePositive61813 - 6279335337.4
abc transporter atp-binding proteinEM595_RS17510Not AvailablePositive62790 - 6376435940.3
udp-4-amino-4-deoxy-l-arabinose aminotransferaseEM595_RS17515Not AvailablePositive64237 - 6537641197.7
undecaprenyl-phosphate 4-deoxy-4-formamido-l-arabinose transferaseEM595_RS17520Not AvailablePositive65373 - 6635336503.3
bifunctional udp-4-amino-4-deoxy-l-arabinose formyltransferase/udp-glucuronic acid oxidase arnaEM595_RS17525Not AvailablePositive66350 - 6833873497.9
4-deoxy-4-formamido-l-arabinose- phosphoundecaprenol deformylaseEM595_RS17530Not AvailablePositive68335 - 6923733292.0
lipid iv(a) 4-amino-4-deoxy-l-arabinosyltransferaseEM595_RS17535Not AvailablePositive69234 - 7089261613.9
4-amino-4-deoxy-l-arabinose-phosphoundecaprenol flippase subunit arneEM595_RS17540Not AvailablePositive70889 - 7121812151.7
4-amino-4-deoxy-l-arabinose-phosphoundecaprenol flippase subunit arnfEM595_RS17545Not AvailablePositive71215 - 7158313367.0
abc transporter substrate-binding proteinEM595_RS17550Not AvailableNegative71589 - 7267139844.3

Displaying genes 3541 – 3550 of 4135 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

5 records
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Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm00020046-methylsalicylateC8H7O3Chemical structure of 6-methylsalicylateNot available
Average151.142Da
Monoisotopic151.040067665Da
BASm0002963meso-2,6-diaminoheptanedioateC7H14N2O4Chemical structure of meso-2,6-diaminoheptanedioate922-54-3
Average190.1971Da
Monoisotopic190.0953569Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm0003657N-acetyl-D-muramate 6-phosphateC11H17NO11PChemical structure of N-acetyl-D-muramate 6-phosphateNot available
Average370.228Da
Monoisotopic370.0555681Da
BASm00050533',3'-c-di-AMPC20H22N10O12P2Chemical structure of 3',3'-c-di-AMPNot available
Average656.403Da
Monoisotopic656.0904873Da

Displaying 1–5 of 5 metabolites

Health Effects

No health effects information available for this bacterium.