Duffyella gerundensis

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Erwiniaceae

Genus

Duffyella

Description

Duffyella gerundensis is characterized by its possession of three replicons. This trait is significant as it may influence its genetic stability and adaptability in various environments. The organism is represented by three accessions in the sequence database: NZ_LN907828.1, NZ_LN907827.1, and NZ_LN907829.1. These accessions provide genomic information that can be utilized for further research into the species' phylogenetic relationships and functional capabilities. The multi-replicon structure could suggest a complex genomic architecture that might facilitate metabolic versatility or resilience under different environmental stresses. Understanding the genetic framework of Duffyella gerundensis can also contribute to ecological insights. The presence of multiple replicons may allow for a rapid response to environmental changes, which is crucial for survival and competition among microbial communities. This adaptability could play a role in its ecological niche, influencing its interactions with other microorganisms and its overall contribution to the ecosystem in which it resides.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyErwiniaceae
GenusDuffyella
SpeciesDuffyella gerundensis
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatrumen
Biotic relationshipNot Available
Host(s)Ovis aries
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Duffyella gerundensis isolate E_g_EM595 chromosome 1, complete

Gene Summary

Adenine Count

843143 bp

Thymine Count

839675 bp

Guanine Count

1046560 bp

Cytosine Count

1045635 bp

Genome Length

3775020 bp

Protein-coding Genes

3338 genes

Non-Coding Genes

148 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
cysteine desulfurase csdaEM595_RS14040Not AvailablePositive3036625 - 303783042860.3
cysteine desulfurase sulfur acceptor subunit csdeEM595_RS14045Not AvailablePositive3037833 - 303827315973.3
trna cyclic n6-threonylcarbamoyladenosine(37) synthase tcdaEM595_RS14050Not AvailableNegative3038270 - 303907929031.1
murein transglycosylase aEM595_RS14055Not AvailableNegative3039122 - 304027042081.1
Trna-metNot AvailableNot AvailablePositive3040483 - 3040559Not Available
Trna-metNot AvailableNot AvailablePositive3040620 - 3040696Not Available
n-acetylmuramoyl-l-alanine amidase amicEM595_RS14070Not AvailableNegative3040777 - 304201545583.4
amino-acid n-acetyltransferaseEM595_RS14075Not AvailablePositive3042236 - 304359150594.1
exodeoxyribonuclease v subunit alphaEM595_RS14080Not AvailableNegative3043625 - 304545166249.0
exodeoxyribonuclease v subunit betaEM595_RS14085Not AvailableNegative3045448 - 3048993133663.0

Displaying genes 2851 – 2860 of 4135 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

5 records
Metabolite IDMetabolite nameStructureCAS number
BASm00020046-methylsalicylateC8H7O3Chemical structure of 6-methylsalicylateNot available
Average151.142Da
Monoisotopic151.040067665Da
BASm0002963meso-2,6-diaminoheptanedioateC7H14N2O4Chemical structure of meso-2,6-diaminoheptanedioate922-54-3
Average190.1971Da
Monoisotopic190.0953569Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm0003657N-acetyl-D-muramate 6-phosphateC11H17NO11PChemical structure of N-acetyl-D-muramate 6-phosphateNot available
Average370.228Da
Monoisotopic370.0555681Da
BASm00050533',3'-c-di-AMPC20H22N10O12P2Chemical structure of 3',3'-c-di-AMPNot available
Average656.403Da
Monoisotopic656.0904873Da

Displaying 1–5 of 5 metabolites

Health Effects

No health effects information available for this bacterium.