Duffyella gerundensis

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Erwiniaceae

Genus

Duffyella

Description

Duffyella gerundensis is characterized by its possession of three replicons. This trait is significant as it may influence its genetic stability and adaptability in various environments. The organism is represented by three accessions in the sequence database: NZ_LN907828.1, NZ_LN907827.1, and NZ_LN907829.1. These accessions provide genomic information that can be utilized for further research into the species' phylogenetic relationships and functional capabilities. The multi-replicon structure could suggest a complex genomic architecture that might facilitate metabolic versatility or resilience under different environmental stresses. Understanding the genetic framework of Duffyella gerundensis can also contribute to ecological insights. The presence of multiple replicons may allow for a rapid response to environmental changes, which is crucial for survival and competition among microbial communities. This adaptability could play a role in its ecological niche, influencing its interactions with other microorganisms and its overall contribution to the ecosystem in which it resides.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyErwiniaceae
GenusDuffyella
SpeciesDuffyella gerundensis
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatrumen
Biotic relationshipNot Available
Host(s)Ovis aries
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Duffyella gerundensis isolate E_g_EM595 chromosome 1, complete

Gene Summary

Adenine Count

843143 bp

Thymine Count

839675 bp

Guanine Count

1046560 bp

Cytosine Count

1045635 bp

Genome Length

3775020 bp

Protein-coding Genes

3338 genes

Non-Coding Genes

148 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dsbe family thiol:disulfide interchange proteinEM595_RS12595Not AvailableNegative2736314 - 273687120871.2
heme lyase ccmf/nrfe family subunitEM595_RS12600Not AvailableNegative2736868 - 273882372456.5
cytochrome c maturation protein ccmeEM595_RS12605Not AvailableNegative2738820 - 273929617125.9
heme exporter protein ccmdEM595_RS12610Not AvailableNegative2739293 - 27395238544.45
heme abc transporter permeaseEM595_RS12615Not AvailableNegative2739520 - 274026327828.7
heme exporter protein ccmbEM595_RS12620Not AvailableNegative2740297 - 274095623094.8
cytochrome c biogenesis heme-transporting atpase ccmaEM595_RS12625Not AvailableNegative2740950 - 274157322780.5
formate/nitrite transporter family proteinEM595_RS12630Not AvailablePositive2741816 - 274273033289.4
hypothetical proteinEM595_RS12635Not AvailablePositive2742787 - 274347925901.0
Trna-argNot AvailableNot AvailablePositive2743816 - 2743890Not Available

Displaying genes 2561 – 2570 of 4135 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

5 records
Metabolite IDMetabolite nameStructureCAS number
BASm00020046-methylsalicylateC8H7O3Chemical structure of 6-methylsalicylateNot available
Average151.142Da
Monoisotopic151.040067665Da
BASm0002963meso-2,6-diaminoheptanedioateC7H14N2O4Chemical structure of meso-2,6-diaminoheptanedioate922-54-3
Average190.1971Da
Monoisotopic190.0953569Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm0003657N-acetyl-D-muramate 6-phosphateC11H17NO11PChemical structure of N-acetyl-D-muramate 6-phosphateNot available
Average370.228Da
Monoisotopic370.0555681Da
BASm00050533',3'-c-di-AMPC20H22N10O12P2Chemical structure of 3',3'-c-di-AMPNot available
Average656.403Da
Monoisotopic656.0904873Da

Displaying 1–5 of 5 metabolites

Health Effects

No health effects information available for this bacterium.