Pararhizobium polonicum str. F5.1

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Pararhizobium

Description

Pararhizobium polonicum str. F5.1 is characterized by possessing four replicons, which is notable for its genetic organization. The strain is documented with the following accessions: NZ_CM004503.1, LGLV00000000.1, NZ_CM004502.1, and NZ_CM004504.1. These accessions provide genetic sequence information that can be critical for understanding the genomic features and potential functionalities of this strain. As a member of the Pararhizobium genus, P. polonicum str. F5.1 is likely involved in symbiotic nitrogen fixation, a process that is vital for soil fertility and plant health. The presence of multiple replicons may suggest a complex regulatory network that could enhance its adaptability and ecological fitness in various environments. This adaptability is crucial for survival in diverse soil types and conditions, where it may interact with plant roots and contribute to nutrient cycling. Understanding the genomic structure and traits of Pararhizobium polonicum str. F5.1 can provide insights into its ecological role, particularly in agricultural settings where it may be used to improve crop yields through natural nitrogen fixation. Such insights highlight the importance of studying microbial strains like P. polonicum in the context of sustainable agriculture and ecosystem management.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusPararhizobium
SpeciesPararhizobium polonicum
StrainF5.1

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pararhizobium polonicum strain F5.1 plasmid pF5.1b, whole genome

Gene Summary

Adenine Count

29554 bp

Thymine Count

29116 bp

Guanine Count

42664 bp

Cytosine Count

42158 bp

Genome Length

143492 bp

Protein-coding Genes

135 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
peptidase m20ADU59_13835Not AvailableNegative2884730 - 288631057468.8
transcriptional regulatorADU59_13840P55576Positive2886470 - 288736632785.0
spermidine/putrescine abc transporterADU59_13845Q1GIE5Positive2887486 - 288855938880.5
polyamine abc transporter substrate-binding proteinADU59_13850Not AvailablePositive2888632 - 288971138339.6
polyamine abc transporter permeaseADU59_13855Not AvailablePositive2889884 - 289071130225.6
polyamine abc transporter permeaseADU59_13860Not AvailablePositive2890716 - 289152229469.4
hypothetical proteinADU59_13865Not AvailablePositive2891597 - 289321956472.4
mfs transporterADU59_13870Not AvailableNegative2893223 - 289443141875.1
tetr family transcriptional regulatorADU59_13875Not AvailablePositive2894551 - 289511420463.3
ubiquinone biosynthesis protein ubibADU59_13880P97478Positive2895212 - 289580522351.1

Displaying genes 3041 – 3050 of 6067 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

8 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0002051D-fructoseC6H12O6Chemical structure of D-fructose57-48-7
Average180.1559Da
Monoisotopic180.0633881Da
BASm0003333(2R)-3-phosphoglycerateC3H4O7PChemical structure of (2R)-3-phosphoglycerateNot available
Average183.033Da
Monoisotopic182.9711102Da
BASm0003346(2R)-2-phosphoglycerateC3H4O7PChemical structure of (2R)-2-phosphoglycerateNot available
Average183.033Da
Monoisotopic182.9711102Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm0007704N-acetyl-L-methionine sulfoneC7H12NO5SChemical structure of N-acetyl-L-methionine sulfoneNot available
Average222.24Da
Monoisotopic222.0441672Da
BASm0007705L-methionine sulfoximineC5H12N2O3SChemical structure of L-methionine sulfoximineNot available
Average180.22Da
Monoisotopic180.0568634Da
BASm0007706N-acetyl-L-methionine sulfoximineC7H13N2O4SChemical structure of N-acetyl-L-methionine sulfoximineNot available
Average221.25Da
Monoisotopic221.060151661Da

Displaying 1–8 of 8 metabolites

Health Effects

No health effects information available for this bacterium.