Pararhizobium polonicum str. F5.1

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Pararhizobium

Description

Pararhizobium polonicum str. F5.1 is characterized by possessing four replicons, which is notable for its genetic organization. The strain is documented with the following accessions: NZ_CM004503.1, LGLV00000000.1, NZ_CM004502.1, and NZ_CM004504.1. These accessions provide genetic sequence information that can be critical for understanding the genomic features and potential functionalities of this strain. As a member of the Pararhizobium genus, P. polonicum str. F5.1 is likely involved in symbiotic nitrogen fixation, a process that is vital for soil fertility and plant health. The presence of multiple replicons may suggest a complex regulatory network that could enhance its adaptability and ecological fitness in various environments. This adaptability is crucial for survival in diverse soil types and conditions, where it may interact with plant roots and contribute to nutrient cycling. Understanding the genomic structure and traits of Pararhizobium polonicum str. F5.1 can provide insights into its ecological role, particularly in agricultural settings where it may be used to improve crop yields through natural nitrogen fixation. Such insights highlight the importance of studying microbial strains like P. polonicum in the context of sustainable agriculture and ecosystem management.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusPararhizobium
SpeciesPararhizobium polonicum
StrainF5.1

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pararhizobium polonicum strain F5.1 plasmid pF5.1a, whole genome

Gene Summary

Adenine Count

37196 bp

Thymine Count

36960 bp

Guanine Count

53968 bp

Cytosine Count

53203 bp

Genome Length

181327 bp

Protein-coding Genes

177 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
plasmid partitioning protein repaADU59_RS00850P05682Positive151 - 135044835.5
plasmid partitioning protein repbADU59_RS00855P55392Positive1433 - 241035956.9
plasmid replication protein repcADU59_RS00860P05684Positive2553 - 387548830.3
recombinase family proteinADU59_RS00865P55389Negative3884 - 482534607.8
rhe_pe00001 family proteinADU59_RS00870P55388Positive5108 - 621740480.7
hypothetical proteinADU59_RS00875Not AvailablePositive6354 - 670413393.5
hypothetical proteinADU59_RS00880Not AvailablePositive6880 - 759625709.1
res family nad+ phosphorylaseADU59_RS00885Not AvailablePositive7605 - 818921330.7
duf6088 family proteinADU59_RS00890Not AvailablePositive8629 - 922220694.1
aaa family atpaseADU59_RS00900C5A6P8Positive9472 - 1045835833.1

Displaying genes 1 – 10 of 6067 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

18 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm00004323,5-dichlorocatecholC6H4Cl2O2Chemical structure of 3,5-dichlorocatecholNot available
Average179.001Da
Monoisotopic177.9588348Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm00007052-dehydro-3-deoxy-D-arabinonateC5H7O5Chemical structure of 2-dehydro-3-deoxy-D-arabinonateNot available
Average147.107Da
Monoisotopic147.0298969Da
BASm00007183-maleylpyruvateC7H4O6Chemical structure of 3-maleylpyruvateNot available
Average184.104Da
Monoisotopic184.001885009Da
BASm00008763-hydroxypyruvateC3H3O4Chemical structure of 3-hydroxypyruvateNot available
Average103.054Da
Monoisotopic103.003682157Da
BASm0000950L-xyluloseC5H10O5Chemical structure of L-xylulose527-50-4
Average150.1299Da
Monoisotopic150.05282343Da
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da

Displaying 1–10 of 18 metabolites

Health Effects

No health effects information available for this bacterium.