Pararhizobium polonicum str. F5.1

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Pararhizobium

Description

Pararhizobium polonicum str. F5.1 is characterized by possessing four replicons, which is notable for its genetic organization. The strain is documented with the following accessions: NZ_CM004503.1, LGLV00000000.1, NZ_CM004502.1, and NZ_CM004504.1. These accessions provide genetic sequence information that can be critical for understanding the genomic features and potential functionalities of this strain. As a member of the Pararhizobium genus, P. polonicum str. F5.1 is likely involved in symbiotic nitrogen fixation, a process that is vital for soil fertility and plant health. The presence of multiple replicons may suggest a complex regulatory network that could enhance its adaptability and ecological fitness in various environments. This adaptability is crucial for survival in diverse soil types and conditions, where it may interact with plant roots and contribute to nutrient cycling. Understanding the genomic structure and traits of Pararhizobium polonicum str. F5.1 can provide insights into its ecological role, particularly in agricultural settings where it may be used to improve crop yields through natural nitrogen fixation. Such insights highlight the importance of studying microbial strains like P. polonicum in the context of sustainable agriculture and ecosystem management.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusPararhizobium
SpeciesPararhizobium polonicum
StrainF5.1

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pararhizobium polonicum str. F5.1


Gene Summary

Adenine Count

29554 bp

Thymine Count

29116 bp

Guanine Count

42664 bp

Cytosine Count

42158 bp

Genome Length

143492 bp

Protein-coding Genes

135 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
s8 family peptidaseADU59_RS00905Not AvailablePositive10462 - 1297291266.8
incp-type conjugal transfer protein trbiADU59_RS00910Q5F9T5Positive13260 - 134697437.79
abc transporter atp-binding proteinADU59_RS00915O53645Negative13469 - 17074129543.0
abc transporter atp-binding proteinADU59_RS00920Q57RB2Negative17158 - 1867854942.4
abc transporter permeaseADU59_RS00925P51000Negative18603 - 1941828382.3
abc transporter permeaseADU59_RS00930Q5PGP5Negative19460 - 2042233898.3
abc transporter substrate-binding proteinADU59_RS00935P55669Negative20426 - 2198556358.1
murr/rpir family transcriptional regulatorADU59_RS00940Not AvailableNegative22251 - 2309330274.7
tim barrel proteinADU59_RS00945P55451Negative23195 - 2352712438.8
sos response-associated peptidaseADU59_RS00950Not AvailableNegative23548 - 2430928678.2

Displaying genes 11 – 20 of 6067 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

8 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0002051D-fructoseC6H12O6Chemical structure of D-fructose57-48-7
Average180.1559Da
Monoisotopic180.0633881Da
BASm0003333(2R)-3-phosphoglycerateC3H4O7PChemical structure of (2R)-3-phosphoglycerateNot available
Average183.033Da
Monoisotopic182.9711102Da
BASm0003346(2R)-2-phosphoglycerateC3H4O7PChemical structure of (2R)-2-phosphoglycerateNot available
Average183.033Da
Monoisotopic182.9711102Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm0007704N-acetyl-L-methionine sulfoneC7H12NO5SChemical structure of N-acetyl-L-methionine sulfoneNot available
Average222.24Da
Monoisotopic222.0441672Da
BASm0007705L-methionine sulfoximineC5H12N2O3SChemical structure of L-methionine sulfoximineNot available
Average180.22Da
Monoisotopic180.0568634Da
BASm0007706N-acetyl-L-methionine sulfoximineC7H13N2O4SChemical structure of N-acetyl-L-methionine sulfoximineNot available
Average221.25Da
Monoisotopic221.060151661Da

Displaying 1–8 of 8 metabolites

Health Effects

No health effects information available for this bacterium.