Novosphingobium sp. P6W

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Novosphingobium

Description

Novosphingobium sp. P6W is characterized by the presence of flagella, which indicates its motility and ability to navigate through various environments. This trait is essential for its survival and potential ecological interactions, as motility can influence nutrient acquisition and colonization of niches. The genomic structure of Novosphingobium sp. P6W includes four replicons, suggesting a complex genomic architecture that may confer advantages in terms of genetic diversity and adaptability. The multiple replicons may facilitate the organism's response to environmental stresses or changes, enhancing its survival in various habitats. The organism is represented in public databases with several accessions: NZ_CP030355.1, NZ_CP030352.1, NZ_CP030353.1, and NZ_CP030354.1. These accessions provide insights into its genetic makeup and allow for further study of its biochemical pathways and ecological roles. In summary, Novosphingobium sp. P6W's motility, indicated by flagella presence, along with its four replicons, points to a potentially versatile and adaptive organism. This adaptability may play a significant role in its ecological interactions, possibly influencing nutrient cycling and microbial community dynamics in its environment.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusNovosphingobium
SpeciesNovosphingobium sp. P6W
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Novosphingobium sp. P6W plasmid pP6W2, complete sequence.

Gene Summary

Adenine Count

39657 bp

Thymine Count

39104 bp

Guanine Count

54268 bp

Cytosine Count

55643 bp

Genome Length

188672 bp

Protein-coding Genes

185 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
heat-inducible transcriptional repressor hrcaTQ38_RS09700Not AvailableNegative1989936 - 199097936403.1
ribonuclease phTQ38_RS09705Not AvailablePositive1991108 - 199182425471.6
rdgb/ham1 family non-canonical purine ntp pyrophosphataseTQ38_RS09710Not AvailablePositive1991887 - 199251622467.5
radical sam family heme chaperone hemwTQ38_RS09715Not AvailablePositive1992526 - 199367741679.4
tyrosine recombinase xercTQ38_RS09720Not AvailablePositive1993690 - 199458931965.8
deda family proteinTQ38_RS09725Not AvailableNegative1994623 - 199522522743.3
glutathione synthaseTQ38_RS09730Not AvailableNegative1995247 - 199621835023.1
yran family proteinTQ38_RS09735Not AvailableNegative1996333 - 199669213835.0
16s rrna (cytidine(1402)-2'-o)-methyltransferaseTQ38_RS09740Not AvailableNegative1996706 - 199753329049.2
penicillin-binding protein activatorTQ38_RS09745Not AvailablePositive1997574 - 199877041518.6

Displaying genes 4671 – 4680 of 6041 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.