Novosphingobium sp. P6W

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Novosphingobium

Description

Novosphingobium sp. P6W is characterized by the presence of flagella, which indicates its motility and ability to navigate through various environments. This trait is essential for its survival and potential ecological interactions, as motility can influence nutrient acquisition and colonization of niches. The genomic structure of Novosphingobium sp. P6W includes four replicons, suggesting a complex genomic architecture that may confer advantages in terms of genetic diversity and adaptability. The multiple replicons may facilitate the organism's response to environmental stresses or changes, enhancing its survival in various habitats. The organism is represented in public databases with several accessions: NZ_CP030355.1, NZ_CP030352.1, NZ_CP030353.1, and NZ_CP030354.1. These accessions provide insights into its genetic makeup and allow for further study of its biochemical pathways and ecological roles. In summary, Novosphingobium sp. P6W's motility, indicated by flagella presence, along with its four replicons, points to a potentially versatile and adaptive organism. This adaptability may play a significant role in its ecological interactions, possibly influencing nutrient cycling and microbial community dynamics in its environment.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusNovosphingobium
SpeciesNovosphingobium sp. P6W
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Novosphingobium sp. P6W plasmid pP6W2, complete sequence.

Gene Summary

Adenine Count

39657 bp

Thymine Count

39104 bp

Guanine Count

54268 bp

Cytosine Count

55643 bp

Genome Length

188672 bp

Protein-coding Genes

185 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
aromatic ring-hydroxylating oxygenase subunit alphaTQ38_RS22050Not AvailableNegative1314508 - 131584551867.0
tetr/acrr family transcriptional regulatorTQ38_RS22055Not AvailableNegative1315967 - 131667425721.1
transglycosylase domain-containing proteinTQ38_RS22060Not AvailableNegative1316775 - 131881772648.5
mechanosensitive ion channel family proteinTQ38_RS22065Not AvailableNegative1318919 - 132008241581.8
fdhf/ydep family oxidoreductaseTQ38_RS22070Not AvailableNegative1320309 - 132257381786.9
metal/formaldehyde-sensitive transcriptional repressorTQ38_RS22075Not AvailablePositive1322696 - 132297110079.3
cdf family co(ii)/ni(ii) efflux transporter dmefTQ38_RS22080Not AvailablePositive1322986 - 132389432250.7
sdr family nad(p)-dependent oxidoreductaseTQ38_RS22085Not AvailableNegative1323903 - 132466726239.7
hypothetical proteinTQ38_RS31075Not AvailableNegative1324633 - 132499212996.3
histidinol dehydrogenaseTQ38_RS31080Not AvailableNegative1324962 - 13251988674.47

Displaying genes 1291 – 1300 of 6041 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.